MirGeneDB 3.0
MirGeneDB ID

Egr-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-10228
Paralogues
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pca-Mir-12-P12  Pca-Mir-12-P13  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Snu-Mir-12  Tca-Mir-12  Tur-Mir-12-P14  Tur-Mir-12-P15  War-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)		 APAU02000061.1: 48094-48163 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUGACCGGGAUUUUACUCUGCUCCAGUAUGAGUAUUGUACCAUGCGGUGAGUGACCUUGUCUCCUUCCACCUACUCAUUGCAGGGUAGAAUACUCCCACCAAACAGAGUCGAACGGCAUUCAGUCGUG
Get precursor sequence
Structure
        10           20        30        40        50        60    
CUUUGACCGGGAUUUUA---|    CUCCA  AU       G    A        GUGACCUUGUC 
                    CUCUG     GU  GAGUAUU UACC UGCGGUGA           U
                    GAGAC     CA  CUCAUAA AUGG ACGUUACU           C
GUGCUGACUUACGGCAAGCU^    AAAC-  CC       G    G        CAUCCACCUUC 
.       120       110        100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Mature sequence

Egr-Mir-12_5p
mirBase accessionMIMAT0041185
Sequence 
0- UGAGUAUUGUACCAUGCGGUGA -22
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Star sequence

Egr-Mir-12_3p* (predicted)
mirBase accessionMIMAT0041186
Sequence 
48- AUUGCAGGGUAGAAUACUCCCA -70
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