MirGeneDB ID | Mgi-Mir-12 |
Family name |
MIR-12 (all species) |
Seed |
GAGUAUU |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-12
Aga-Mir-12
Agr-Mir-12
Ava-Mir-12
Bge-Mir-12
Bko-Mir-12
Bpl-Mir-12
Csc-Mir-12
Cte-Mir-12
Dan-Mir-12
Dgr-Mir-12
Dlo-Mir-12
Dma-Mir-12
Dme-Mir-12
Dmo-Mir-12
Dpu-Mir-12
Dsi-Mir-12
Eba-Mir-12
Efe-Mir-12-P1
Efe-Mir-12-P2
Egr-Mir-12
Esc-Mir-12
Gpa-Mir-12
Gsp-Mir-12
Hme-Mir-12
Hru-Mir-12
Isc-Mir-12
Lan-Mir-12-P3
Lan-Mir-12-P4
Lgi-Mir-12
Lhy-Mir-12
Llo-Mir-12
Lpo-Mir-12-P5
Lpo-Mir-12-P6
Lpo-Mir-12-P7
Lpo-Mir-12-P8
Mom-Mir-12
Npo-Mir-12
Ofu-Mir-12
Ovu-Mir-12
Pau-Mir-12
Pca-Mir-12-P12
Pca-Mir-12-P13
Pcr-Mir-12
Pdu-Mir-12
Pve-Mir-12
Rph-Mir-12
Sme-Mir-12-P9
Sme-Mir-12-P10
Sme-Mir-12-P11
Snu-Mir-12
Tca-Mir-12
Tur-Mir-12-P14
Tur-Mir-12-P15
War-Mir-12
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (CGI_GCA_000297895.1) |
scaffold1785: 68054-68110 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAACUUCUACAAGAACUUGGCCAUUGUGAGUGAGUAUUACAUCAGGUACUGAGUGAAAGUAGUUCAGUACCUUCUGUGAUAUUCUUACACAGUGAGUCGCCUGCAGUCACCAUGGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAACUUCUACAAGAACUU- -| AGU UC GUGAA
GGC CAUUGUG GAGUAUUACA AGGUACUGA \
CUG GUGACAC CUUAUAGUGU UCCAUGACU A
AAGGUACCACUGACGUCCG A^ AUU CU UGAUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Mir-12_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUACAUCAGGUACUGA -22
Get sequence
|
Star sequence |
Mgi-Mir-12_3p* |
mirBase accession | None |
Sequence |
35- AGUACCUUCUGUGAUAUUCUUA -57
Get sequence
|