Mir-12-P15

MirGeneDB ID

Tur-Mir-12-P15

Family name

MIR-12 (all species)

Seed

GAGUAUU

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-12b

Paralogues

Tur-Mir-12-P14

Orthologues

Aae-Mir-12 Aga-Mir-12 Agr-Mir-12 Ava-Mir-12 Bge-Mir-12 Bko-Mir-12 Bpl-Mir-12 Csc-Mir-12 Cte-Mir-12 Dan-Mir-12 Dgr-Mir-12 Dlo-Mir-12 Dma-Mir-12 Dme-Mir-12 Dmo-Mir-12 Dpu-Mir-12 Dsi-Mir-12 Eba-Mir-12 Egr-Mir-12 Esc-Mir-12 Gpa-Mir-12 Gsp-Mir-12 Hme-Mir-12 Hru-Mir-12 Isc-Mir-12 Lgi-Mir-12 Lhy-Mir-12 Llo-Mir-12 Mgi-Mir-12 Mom-Mir-12 Npo-Mir-12 Ofu-Mir-12 Ovu-Mir-12 Pau-Mir-12 Pcr-Mir-12 Pdu-Mir-12 Pve-Mir-12 Rph-Mir-12 Snu-Mir-12 Tca-Mir-12 War-Mir-12

Node of Origin (locus)

T. urticae

Node of Origin (family)

Protostomia

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587311.1: 1901159-1901218 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-12-P15)

Mir-12-P15 HE587311.1: 1901159-1901218 [-] Ensembl
Mir-216-P2 HE587311.1: 1901303-1901367 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UCACUUAGCAAACCAUGGAUGCACAAGAGGUGAGUAUUUCUCCAGGUACUGAUGAGUUGAGUUGAUUAGUACCUGGAAAAUUAACUCACCUCUUGUUGUAUCAUUAUUCAACUUGUUAUC

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Structure

        10         20         30          40        50         
UCACUUAGCAAACCAUG-     -             --|   C            UGAGUU 
                  GAUGC ACAAGAGGUGAGU  AUUU UCCAGGUACUGA      \
                  CUAUG UGUUCUCCACUCA  UAAA AGGUCCAUGAUU      G
CUAUUGUUCAACUUAUUA     U             AU^   -            AGUUGA 
.       110       100        90        80         70        60

Deep sequencing

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Comment

There are Dicer cuts -1 and -2 on both arms.

3' NTU

Motifs

Tissue expression

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Mature sequence

Tur-Mir-12-P15_5p

mirBase accession

MIMAT0023044

Sequence

0- UGAGUAUUUCUCCAGGUACUGA -22

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Star sequence

Tur-Mir-12-P15_3p*

mirBase accession

MIMAT0023045

Sequence

37- AGUACCUGGAAAAUUAACUCACC -60

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