MirGeneDB ID | Ovu-Mir-12 |
Family name |
MIR-12 (all species) |
Seed |
GAGUAUU |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-12
Bge-Mir-12
Bpl-Mir-12
Cgi-Mir-12
Csc-Mir-12
Cte-Mir-12
Dan-Mir-12
Dma-Mir-12
Dme-Mir-12
Dmo-Mir-12
Dpu-Mir-12
Dsi-Mir-12
Efe-Mir-12-P1
Efe-Mir-12-P2
Esc-Mir-12
Hme-Mir-12
Isc-Mir-12
Lan-Mir-12-P3
Lan-Mir-12-P4
Lgi-Mir-12
Lpo-Mir-12-P5
Lpo-Mir-12-P6
Lpo-Mir-12-P7
Lpo-Mir-12-P8
Npo-Mir-12
Sme-Mir-12-P9
Sme-Mir-12-P10
Sme-Mir-12-P11
Tca-Mir-12
|
Node of Origin (locus) |
Protostomia
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Node of Origin (family) |
Protostomia
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01022029.1: 178502-178560 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAUAUUUUUUUUUGCCGAUCUACAAGCUGUGAGUAUUACAUCAGGUACUGAUUCUUUUGUUGGUUUAGUACAUUUUGUAAUGCUUGCAGUGUGUAUCGGCAUAUCAGACUGCAACAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAUAUUUUUUUUUGCC----| UC A UG UCAG UUCUUU
GA UACA GCUG AGUAUUACA GUACUGA \
CU AUGU UGAC UCGUAAUGU CAUGAUU U
UUACAACGUCAGACUAUACGG^ -- G GU UUUA UGGUUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Mature sequence |
Ovu-Mir-12_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUACAUCAGGUACUGA -22
Get sequence
|
Star sequence |
Ovu-Mir-12_3p* |
mirBase accession | None |
Sequence |
37- AGUACAUUUUGUAAUGCUUGCA -59
Get sequence
|