MirGeneDB ID | Tur-Mir-12-P14 |
Family name |
MIR-12 (all species) |
Seed |
GAGUAUU |
Species |
Two-spotted spider mite (Tetranychus urticae) |
MiRBase ID |
tur-mir-12a
|
Paralogues |
Tur-Mir-12-P15
|
Orthologues |
Aae-Mir-12
Aga-Mir-12
Agr-Mir-12
Ava-Mir-12
Bge-Mir-12
Bko-Mir-12
Bpl-Mir-12
Csc-Mir-12
Cte-Mir-12
Dan-Mir-12
Dgr-Mir-12
Dlo-Mir-12
Dma-Mir-12
Dme-Mir-12
Dmo-Mir-12
Dpu-Mir-12
Dsi-Mir-12
Eba-Mir-12
Egr-Mir-12
Esc-Mir-12
Gpa-Mir-12
Gsp-Mir-12
Hme-Mir-12
Hru-Mir-12
Isc-Mir-12
Lgi-Mir-12
Lhy-Mir-12
Llo-Mir-12
Mgi-Mir-12
Mom-Mir-12
Npo-Mir-12
Ofu-Mir-12
Ovu-Mir-12
Pau-Mir-12
Pcr-Mir-12
Pdu-Mir-12
Pve-Mir-12
Rph-Mir-12
Snu-Mir-12
Tca-Mir-12
War-Mir-12
|
Node of Origin (locus) |
T. urticae
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587328.1: 1008240-1008300 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAUUCAAUUUCAUCAAGUGUGAUUGCCUGUGAGUAUUACAUCAGGUACUGGUUGAUUAGAUUUAAUCCAGUACUUAAUGUGAGACUCAUCGACAGUUACACUCAAUCGUCUUAAAUGGUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAUUCAAUUUCAUCAA--| CCU A C UUGAUUA
GUGUGAUUG GUGAGU UUACAU AGGUACUGG \
CACAUUGAC UACUCA AGUGUA UUCAUGACC G
CUGGUAAAUUCUGCUAACU^ AGC G A UAAUUUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts -1 and -2 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tur-Mir-12-P14_5p |
mirBase accession | MIMAT0023102 |
Sequence |
0- UGAGUAUUACAUCAGGUACUGG -22
Get sequence
|
Star sequence |
Tur-Mir-12-P14_3p* |
mirBase accession | MIMAT0023103 |
Sequence |
39- AGUACUUAAUGUGAGACUCAUC -61
Get sequence
|