MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-12
Paralogues
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hru-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pca-Mir-12-P12  Pca-Mir-12-P13  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Snu-Mir-12  Tca-Mir-12  Tur-Mir-12-P14  Tur-Mir-12-P15  War-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Hmel_1)		 HE669534: 42572-42850 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-12)		 Mir-216-P1 HE669534: 41197-41253 [+] Ensembl
Mir-12 HE669534: 42572-42850 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUCUCCAAAGAAGAACGUCUCAUUGUCUCUGAGUAUUACUUCAGGUACUGGUAGAAUGAUAUGAGAACUAAGAUCACUUUCACUUUUGAAUUUAUUCAAAUUCAACCAAUGCUGAAAUUUAAAUUUUUAAAUUUCCUAUAUACAAUAAUUCAAAAUCUAUACUUAAAGAGAUUUUGACUUUUUUCAAAUUUAUUAGCAGUAAAACUCUGAUUCUUUACUUUUGUCUUUUAGAAAAAGUUAAGAUUUUUUAAUAUCAUCAUUGUGUCAGUGUCUUCAGUUCUCUACCCAGUGACUGAAUAAUACUUUGAGAUCGUGAUGACAUUUGCAUCGUCGCUACA
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Structure
        10         20         30        40        50        60        70        80        90       100       110       120       130       140       150       160         
GAUCUCCAAAGAAGAAC-   -|   U     U        C     G      UAGAAUGAUAUGAGAACUAAGAUCACUUUCACUUUUGAAUUUAUUCAAAUUCAACCAAUGCUGAAAUUUAAAUUUUUAAAUUUCCUAUAUACAAUAAUUCAAAAUCUAUACUUAAA 
                  GUC UCAU GUCUC GAGUAUUA UUCAG UACUGG                                                                                                                    G
                  CAG AGUG UAGAG UUCAUAAU AAGUC GUGACC                                                                                                                    A
ACAUCGCUGCUACGUUUA   U^   C     U        -     A      CAUCUCUUGACUUCUGUGACUGUGUUACUACUAUAAUUUUUUAGAAUUGAAAAAGAUUUUCUGUUUUCAUUUCUUAGUCUCAAAAUGACGAUUAUUUAAACUUUUUUCAGUUUUAG 
       330       320       310       300        290       280       270       260       250       240       230       220       210       200       190       180       170
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Mature sequence

Hme-Mir-12_5p
mirBase accessionNone
Sequence 
0- UGAGUAUUACUUCAGGUACUGG -22
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Star sequence

Hme-Mir-12_3p*
mirBase accessionMIMAT0024936
Sequence 
257- CAGUGACUGAAUAAUACUUUGA -279
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