MirGeneDB 3.0
MirGeneDB ID

Aga-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-12
Paralogues
Orthologues Aae-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pca-Mir-12-P12  Pca-Mir-12-P13  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Snu-Mir-12  Tca-Mir-12  Tur-Mir-12-P14  Tur-Mir-12-P15  War-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)		 NC_064601.1: 37379265-37379375 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12)		 Mir-12 NC_064601.1: 37379265-37379375 [-] Ensembl
Mir-216-P2 NC_064601.1: 37380031-37380129 [-] Ensembl
Mir-216-P1 NC_064601.1: 37381281-37381346 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGGAGAACUUACACCCGUCCCGCCGGGGUGAGUAUUACAUCAGGUACUGGUGUGUAAUUUAAACAACCAUCGGACAUGGGGGCUGCCCAACUCCUCUUCUGUCCCCGGUCAAGCUAUCAGUACUUGUGUUAUACUCUCCUCGUCGGCAUACGUCUCGCAACGAUCUAAU
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Structure
        10          20        30        40        50        60        70        80     
AGAGGAGAACUUACACCC--| C   C     U      U   U           GUGUAAUUUAAACAACCAUCGGACAUGGGGG 
                    GU CCG CGGGG GAGUAU ACA CAGGUACUGGU                               C
                    UA GGC GCUCC CUCAUA UGU GUUCAUGACUA                               U
UAAUCUAGCAACGCUCUGCA^ C   U     U      U   -           UCGAACUGGCCCCUGUCUUCUCCUCAACCCG 
 .       160       150       140       130        120       110       100        90
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ab Ab He He Mi Mi Ov Ov Ov
Mature sequence

Aga-Mir-12_5p
mirBase accessionMIMAT0005527
Sequence 
0- UGAGUAUUACAUCAGGUACUGGU -23
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Star sequence

Aga-Mir-12_3p*
mirBase accessionNone
Sequence 
89- CAGUACUUGUGUUAUACUCUCC -111
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