MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-12-P9

Family name MIR-12 (all species)
Seed GAGUAUU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-12
Paralogues Sme-Mir-12-P10  Sme-Mir-12-P11 
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Snu-Mir-12  Tca-Mir-12  War-Mir-12 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000015_dd_Smes_g4_15: 155743-155813 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUUCAGCUUAAUUUUAUCCAUCGCUCACUGAGUAUUCUAUCAGGAGUCGAAAAAUGCGUUAAGUUAACUAACGUUUCGUCUCUUGAUGGUUUACUUAAUAAGCAAAGGAUUUUUCUGCAAAUCUUUAAU
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Structure
        10          20        30        40        50        60     
CAAUUCAGCUUAAUUUU--|   AUC   CAC      UU          U   AAAAUGCGUUAA 
                   AUCC   GCU   UGAGUA  CUAUCAGGAG CGA            \
                   UAGG   CGA   AUUCAU  GGUAGUUCUC GCU            G
UAAUUUCUAAACGUCUUUU^   AAA   AUA      UU          U   UUGCAAUCAAUU 
 .       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-12-P9_5p
mirBase accessionMIMAT0003975
Sequence 
0- UGAGUAUUCUAUCAGGAGUCGA -22
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Star sequence

Sme-Mir-12-P9_3p*
mirBase accessionMIMAT0012100
Sequence 
49- GUCUCUUGAUGGUUUACUUAAU -71
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