MirGeneDB ID | Ava-Mir-12 |
Family name |
MIR-12 (all species) |
Seed |
GAGUAUU |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-12
Aga-Mir-12
Agr-Mir-12
Bge-Mir-12
Bko-Mir-12
Bpl-Mir-12
Csc-Mir-12
Cte-Mir-12
Dan-Mir-12
Dgr-Mir-12
Dlo-Mir-12
Dma-Mir-12
Dme-Mir-12
Dmo-Mir-12
Dpu-Mir-12
Dsi-Mir-12
Eba-Mir-12
Efe-Mir-12-P1
Efe-Mir-12-P2
Egr-Mir-12
Esc-Mir-12
Gpa-Mir-12
Gsp-Mir-12
Hme-Mir-12
Hru-Mir-12
Isc-Mir-12
Lan-Mir-12-P3
Lan-Mir-12-P4
Lgi-Mir-12
Lhy-Mir-12
Llo-Mir-12
Lpo-Mir-12-P5
Lpo-Mir-12-P6
Lpo-Mir-12-P7
Lpo-Mir-12-P8
Mgi-Mir-12
Mom-Mir-12
Npo-Mir-12
Ofu-Mir-12
Ovu-Mir-12
Pau-Mir-12
Pca-Mir-12-P12
Pca-Mir-12-P13
Pcr-Mir-12
Pdu-Mir-12
Pve-Mir-12
Rph-Mir-12
Sme-Mir-12-P9
Sme-Mir-12-P10
Sme-Mir-12-P11
Snu-Mir-12
Tca-Mir-12
Tur-Mir-12-P14
Tur-Mir-12-P15
War-Mir-12
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 11031363-11031424 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAUUUAAACAUAUGAAGUGGUCUUUGAUUUGAGUAUUGCACUUGGUAUUGGCUUGAAUAUUCAAUUGACAAUGCCGGUUGAAAUACUCUCAUCACACCAUAAUAUUGUCUAUUUAUUGUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAUUUAAACAUAUGAA----| CUU UU G C GCUUGAAU
GUGGU UGAU GAGUAUU CA UUGGUAUUG A
UACCA ACUA CUCAUAA GU GGCCGUAAC U
UUUGUUAUUUAUCUGUUAUAA^ C-- CU A U AGUUAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ava-Mir-12_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUGCACUUGGUAUUGGC -23
Get sequence
|
Star sequence |
Ava-Mir-12_3p* |
mirBase accession | None |
Sequence |
39- CAAUGCCGGUUGAAAUACUCUCA -62
Get sequence
|