MirGeneDB ID | Lpo-Mir-12-P6 |
Family name |
MIR-12 (all species) |
Seed |
GAGUAUU |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-12-P5
Lpo-Mir-12-P7
Lpo-Mir-12-P8
|
Orthologues |
Aae-Mir-12
Bge-Mir-12
Bpl-Mir-12
Cgi-Mir-12
Csc-Mir-12
Cte-Mir-12
Dan-Mir-12
Dma-Mir-12
Dme-Mir-12
Dmo-Mir-12
Dpu-Mir-12
Dsi-Mir-12
Esc-Mir-12
Hme-Mir-12
Isc-Mir-12
Lgi-Mir-12
Npo-Mir-12
Ovu-Mir-12
Tca-Mir-12
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013672844.1: 18331-18392 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAAAGCAUGGUGGGACAGCUUCCAGUAGAUGAGUAUUACAUCAGGUACUGGUAUUUUUGAUUUCAUAACCAGUACUUAUGUGAUAUUCGUCUUCUGUUUGCGGCAUGCAUCGGUUCGUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCAAAGCAUGGUGGGACA--| UUC U C AUUUUUG
GC CAG AGAUGAGUAUUACAU AGGUACUGGU \
CG GUC UCUGCUUAUAGUGUA UUCAUGACCA A
CUUUGCUUGGCUACGUACGG^ UUU U - AUACUUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Lpo-Mir-12-P6_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUACAUCAGGUACUGGU -23
Get sequence
|
Star sequence |
Lpo-Mir-12-P6_3p* |
mirBase accession | None |
Sequence |
40- CAGUACUUAUGUGAUAUUCGUC -62
Get sequence
|