MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-216-P2e

Family name MIR-216 (all species)
Seed AAUCUCA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-216
Paralogues Sme-Mir-216-P2f 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Hme-Mir-216-P2  Isc-Mir-216-P2  Pca-Mir-216-P2  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Nephrozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000085_dd_Smes_g4_85: 414251-414315 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2e)		 Mir-216-P2e NNSW01000085_dd_Smes_g4_85: 414251-414315 [+] UCSC Ensembl
Mir-12-P10 NNSW01000085_dd_Smes_g4_85: 414521-414575 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAACUCAAUGUCCUGUCAUGAUUUAGCAAGCAAUCUCAGCCUGUUAAUAGGAGUUUGGAAAUGUUUAAAUACUCCUAUAACGUCUGAUGAUUACUUGUCAAAUCAUUUUACCAACAAUUUAUCUG
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Structure
        10          20        30         40        50        60  
GAACUCAAUGUCCUGUC--       AG    C    -|   CC     A       UUGGAAA 
                   AUGAUUU  CAAG AAUC UCAG  UGUUA UAGGAGU       U
                   UACUAAA  GUUC UUAG AGUC  GCAAU AUCCUCA       G
GUCUAUUUAACAACCAUUU       CU    A    U^   U-     -       UAAAUUU 
   120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-216-P2e_5p
mirBase accessionMIMAT0011245
Sequence 
0- CAAUCUCAGCCUGUUAAUAGGAGU -24
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Co-mature sequence

Sme-Mir-216-P2e_3p
mirBase accessionMIMAT0012143
Sequence 
42- UCCUAUAACGUCUGAUGAUUACU -65
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