MirGeneDB 3.0

MirGeneDB ID

Rph-Novel-7

Family name RPH-NOVEL-7 (all species)
Seed UUGAACG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) R. philippinarum
Node of Origin (family) R. philippinarum
Genome context
(Ruditapes_GCA_009026015)
CM018532.1: 2388912-2388969 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCUUCAUAUUAUAUGUUGAUGUUUCAUCCUUGGGAACUUUUGUUUAAUGAUAGACAAAUUAAACAUUGAACGAACGUUUCCGAGAGUGACGCGUCAUGACGCAUCAGAGGAACAGA
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Structure
        10          20        30        40        50        
AUUCUUCAUAUUAUAUGU--|     U   UC         U           AUAGAC 
                    UGAUGU UCA  CUUGGGAAC UUUGUUUAAUG      A
                    ACUGCG AGU  GAGCCUUUG AAGCAAGUUAC      A
AGACAAGGAGACUACGCAGU^     C   GA         C           AAAUUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Novel-7_5p*

mirBase accessionNone
Sequence
0- CUUGGGAACUUUUGUUUAAUGA -22
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Mature sequence

Rph-Novel-7_3p

mirBase accessionNone
Sequence
36- AUUGAACGAACGUUUCCGAGAG -58
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