MirGeneDB ID | Rph-Novel-7 |
Family name |
RPH-NOVEL-7 (all species) |
Seed |
UUGAACG |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
R. philippinarum
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Node of Origin (family) |
R. philippinarum
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Genome context (Ruditapes_GCA_009026015) |
CM018532.1: 2388912-2388969 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUUCUUCAUAUUAUAUGUUGAUGUUUCAUCCUUGGGAACUUUUGUUUAAUGAUAGACAAAUUAAACAUUGAACGAACGUUUCCGAGAGUGACGCGUCAUGACGCAUCAGAGGAACAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUUCUUCAUAUUAUAUGU--| U UC U AUAGAC
UGAUGU UCA CUUGGGAAC UUUGUUUAAUG A
ACUGCG AGU GAGCCUUUG AAGCAAGUUAC A
AGACAAGGAGACUACGCAGU^ C GA C AAAUUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Novel-7_5p* |
mirBase accession | None |
Sequence |
0- CUUGGGAACUUUUGUUUAAUGA -22
Get sequence
|
Mature sequence |
Rph-Novel-7_3p |
mirBase accession | None |
Sequence |
36- AUUGAACGAACGUUUCCGAGAG -58
Get sequence
|