MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-124-P28

Family name MIR-124 (all species)
Seed AAGGCAC
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-124-P27 
Orthologues Aae-Mir-124  Aga-Mir-124  Agr-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Esc-Mir-124  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lhy-Mir-124  Llo-Mir-124  Mgi-Mir-124-P28  Mom-Mir-124  Npo-Mir-124  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spu-Mir-124  Sro-Mir-124  Tca-Mir-124  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) Autobranchia
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)		 CM018524.1: 22473101-22473158 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUCGAGACAACGAAAUGCCUAAAAUUAGCGUCCACUGUGUCGGCCUUGGUGUAUAUUUACCUAUUAAGGCACGCGGUGAAUGCCAAGGUGUGGCAAAUGGCAGCACGUUAUACAA
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Structure
        10          20        30        40        50         
UUCCUCGAGACAACGAAA--|   UAAAA  A    C        CG        GUAUA 
                    UGCC     UU GCGU CACUGUGU  GCCUUGGU     U
                    ACGG     AA CGUA GUGGCGCA  CGGAAUUA     U
AACAUAUUGCACGACGGUAA^   UGUGG  C    A        --        UCCAU 
      110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Rph-Mir-124-P28_5p*
mirBase accessionNone
Sequence 
0- GCGUCCACUGUGUCGGCCUUGGU -23
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Mature sequence

Rph-Mir-124-P28_3p
mirBase accessionNone
Sequence 
37- UAAGGCACGCGGUGAAUGCCA -58
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