Mir-124-P28

MirGeneDB ID

Rph-Mir-124-P28

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-124-P27

Orthologues

Aae-Mir-124 Aga-Mir-124 Agr-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lhy-Mir-124 Llo-Mir-124 Mgi-Mir-124 Mom-Mir-124 Npo-Mir-124 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Tca-Mir-124 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

R. philippinarum

Node of Origin (family)

Bilateria

Genome context
(Ruditapes_GCA_009026015)

CM018524.1: 22473101-22473158 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCUCGAGACAACGAAAUGCCUAAAAUUAGCGUCCACUGUGUCGGCCUUGGUGUAUAUUUACCUAUUAAGGCACGCGGUGAAUGCCAAGGUGUGGCAAAUGGCAGCACGUUAUACAA

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Structure

        10          20        30        40        50         
UUCCUCGAGACAACGAAA--|   UAAAA  A    C        CG        GUAUA 
                    UGCC     UU GCGU CACUGUGU  GCCUUGGU     U
                    ACGG     AA CGUA GUGGCGCA  CGGAAUUA     U
AACAUAUUGCACGACGGUAA^   UGUGG  C    A        --        UCCAU 
      110       100        90        80          70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Star sequence

Rph-Mir-124-P28_5p*

mirBase accession

None

Sequence

0- GCGUCCACUGUGUCGGCCUUGGU -23

Get sequence

Mature sequence

Rph-Mir-124-P28_3p

mirBase accession

None

Sequence

37- UAAGGCACGCGGUGAAUGCCA -58

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