MirGeneDB ID | Rph-Mir-1990-P2 |
Family name |
MIR-1990 (all species) |
Seed |
GGGACUA |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
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Orthologues |
Agr-Mir-1990-P2
Cte-Mir-1990-P2
Cte-Mir-1990-P2-as
Eba-Mir-1990-P2
Efe-Mir-1990-P2
Hru-Mir-1990-P2
Lan-Mir-1990-P2
Lgi-Mir-1990-P2
Mgi-Mir-1990-P2
Mom-Mir-1990-P2
Npo-Mir-1990-P2
Ofu-Mir-1990-P2
Pdu-Mir-1990-P2
Pdu-Mir-1990-P2-as
Pve-Mir-1990-P2a1
Pve-Mir-1990-P2a2
Pve-Mir-1990-P2b
Pve-Mir-1990-P2c
Pve-Mir-1990-P2d
Pve-Mir-1990-P2e
War-Mir-1990-P2
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (Ruditapes_GCA_009026015) |
CM018529.1: 4832540-4832596 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGACCAAAUCUAAGAUUUGUUAAUGUGUGGAGUAAGUUGAUGGGGUCCCAGGUUGCAUUUGUUCCCGGGACUACGUCAACUACUUGCCCACGUGACAAGUACCGACCACGUGACUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGACCAAAUCUAAGAUU---| A U -- A GG A UUGCA
UGUUA UGUG GG AGUA GUUGAUG GUCCC GG \
ACAGU GCAC CC UCAU CAACUGC CAGGG CC U
CAUCAGUGCACCAGCCAUGA^ - - GU - AU C UUGUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Mir-1990-P2_5p* |
mirBase accession | None |
Sequence |
0- AGUAAGUUGAUGGGGUCCCAGG -22
Get sequence
|
Mature sequence |
Rph-Mir-1990-P2_3p |
mirBase accession | None |
Sequence |
35- CGGGACUACGUCAACUACUUGC -57
Get sequence
|