MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-1990-P2

Family name MIR-1990 (all species)
Seed GGGACUA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Efe-Mir-1990-P2  Hru-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mgi-Mir-1990-P2  Mom-Mir-1990-P2  Npo-Mir-1990-P2  Ofu-Mir-1990-P2  Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as  Pve-Mir-1990-P2a1  Pve-Mir-1990-P2a2  Pve-Mir-1990-P2b  Pve-Mir-1990-P2c  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e  War-Mir-1990-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(Ruditapes_GCA_009026015)		 CM018529.1: 4832540-4832596 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGACCAAAUCUAAGAUUUGUUAAUGUGUGGAGUAAGUUGAUGGGGUCCCAGGUUGCAUUUGUUCCCGGGACUACGUCAACUACUUGCCCACGUGACAAGUACCGACCACGUGACUAC
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Structure
        10           20        30          40        50        
GGACCAAAUCUAAGAUU---|    A    U  --    A       GG     A  UUGCA 
                    UGUUA UGUG GG  AGUA GUUGAUG  GUCCC GG     \
                    ACAGU GCAC CC  UCAU CAACUGC  CAGGG CC     U
CAUCAGUGCACCAGCCAUGA^    -    -  GU    -       AU     C  UUGUU 
     110       100         90          80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Rph-Mir-1990-P2_5p*
mirBase accessionNone
Sequence 
0- AGUAAGUUGAUGGGGUCCCAGG -22
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Mature sequence

Rph-Mir-1990-P2_3p
mirBase accessionNone
Sequence 
35- CGGGACUACGUCAACUACUUGC -57
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