MirGeneDB ID | Agr-Mir-1990-P2 |
Family name |
MIR-1990 (all species) |
Seed |
GGGACUA |
Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
MiRBase ID |
|
Paralogues |
Agr-Mir-1990-P1
|
Orthologues |
Cte-Mir-1990-P2
Cte-Mir-1990-P2-as
Eba-Mir-1990-P2
Efe-Mir-1990-P2
Hru-Mir-1990-P2
Lan-Mir-1990-P2
Lgi-Mir-1990-P2
Mgi-Mir-1990-P2
Mom-Mir-1990-P2
Npo-Mir-1990-P2
Ofu-Mir-1990-P2
Pdu-Mir-1990-P2
Pdu-Mir-1990-P2-as
Pve-Mir-1990-P2a1
Pve-Mir-1990-P2a2
Pve-Mir-1990-P2b
Pve-Mir-1990-P2c
Pve-Mir-1990-P2d
Pve-Mir-1990-P2e
Rph-Mir-1990-P2
War-Mir-1990-P2
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_016165875.1_ASM1616587v1_Acanthopleura_granula) |
JABBOT010000001.1: 14814051-14814107 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCAGCUCGGCUACCCGGUAGGGCGUGCGCAGUAAGUUGACUGAGUCCCAGGUAGCUAGGCAUCCAGGGACUACGUCAACUUCUCGCGUAUACUUUACACAGCAACGGUCGCAAGCU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCAGCUCGGCUACCCG-- CG -| U UG A UAGCU
GUAGGG UGCGC AG AAGUUGAC AGUCCC GG \
CAUUUC AUGCG UC UUCAACUG UCAGGG CC A
UCGAACGCUGGCAACGACA AU C^ - CA A UACGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Agr-Mir-1990-P2_5p* |
mirBase accession | None |
Sequence |
0- AGUAAGUUGACUGAGUCCCAGG -22
Get sequence
|
Mature sequence |
Agr-Mir-1990-P2_3p |
mirBase accession | None |
Sequence |
35- AGGGACUACGUCAACUUCUCGC -57
Get sequence
|