MirGeneDB ID | Pdu-Mir-1990-P2-as |
Family name |
MIR-1990 (all species) |
Seed |
GGGACUA |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
|
Paralogues |
Pdu-Mir-1990-P1
Pdu-Mir-1990-P2
|
Orthologues |
Agr-Mir-1990-P2
Cte-Mir-1990-P2
Cte-Mir-1990-P2-as
Eba-Mir-1990-P2
Efe-Mir-1990-P2
Hru-Mir-1990-P2
Lan-Mir-1990-P2
Lgi-Mir-1990-P2
Mgi-Mir-1990-P2
Mom-Mir-1990-P2
Npo-Mir-1990-P2
Ofu-Mir-1990-P2
Pve-Mir-1990-P2a1
Pve-Mir-1990-P2a2
Pve-Mir-1990-P2b
Pve-Mir-1990-P2c
Pve-Mir-1990-P2d
Pve-Mir-1990-P2e
Rph-Mir-1990-P2
War-Mir-1990-P2
|
Node of Origin (locus) |
Pleistoannelida
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000010.1: 42046322-42046378 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUCUUCAGAUGAAAUAGCUUACCAUGAGCUGGAAGUUAACGUAGUCCCGGGUGUGUUUAUUCCCUGGGACUAUGUCAACUUACAACCCAAGGUUUGCUACAGCAGCAUUCAACAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUCUUCAGAUGAAAUA--| UU A AGC G A UGUGU
GC ACC UG UG AAGUU ACGUAGUCCCGGG \
CG UGG AC AC UUCAA UGUAUCAGGGUCC U
CGACAACUUACGACGACAU^ UU A CCA A C CUUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Pdu-Mir-1990-P2-as_5p* |
mirBase accession | None |
Sequence |
0- UGGAAGUUAACGUAGUCCCGGG -22
Get sequence
|
Mature sequence |
Pdu-Mir-1990-P2-as_3p |
mirBase accession | None |
Sequence |
35- UGGGACUAUGUCAACUUACAAC -57
Get sequence
|