MirGeneDB ID | Pdu-Mir-1990-P1 |
Family name |
MIR-1990 (all species) |
Seed |
GUAAGUU |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
|
Paralogues |
Pdu-Mir-1990-P2
Pdu-Mir-1990-P2-as
|
Orthologues |
Agr-Mir-1990-P1
Cte-Mir-1990-P1
Eba-Mir-1990-P1
Efe-Mir-1990-o1
Efe-Mir-1990-P1
Lan-Mir-1990-P1
Ofu-Mir-1990-P1
War-Mir-1990-P1
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000018.1: 7382655-7382715 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGAAGAAGGAUAUUGUUGAAGUCGCCGAUGUGUAAGUUAACGUAGUCCAAGGUUUAUGAAAGGCAAACUUGAGAUUACGAUAACUUUCCAUCGCCGGACUUUCACGAGCGGUCGAGAAGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAAGAAGGAUAUUGUU-- -| C UGU A - GUUUAUG
GAAGU CG CGAUG AAGUUA CGUAGUC CAAG A
UUUCA GC GCUAC UUCAAU GCAUUAG GUUC A
GAGAAGAGCUGGCGAGCAC G^ C CU- A A AAACGGA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Mature sequence |
Pdu-Mir-1990-P1_5p |
mirBase accession | None |
Sequence |
0- UGUAAGUUAACGUAGUCCAAGGUU -24
Get sequence
|
Star sequence |
Pdu-Mir-1990-P1_3p* |
mirBase accession | None |
Sequence |
38- UUGAGAUUACGAUAACUUUCCAU -61
Get sequence
|