MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1990-o1

Family name MIR-1990 (all species)
Seed CGGGACU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1990-P1  Efe-Mir-1990-P2 
Orthologues Agr-Mir-1990-P1  Cte-Mir-1990-P1  Eba-Mir-1990-P1  Lan-Mir-1990-P1  Ofu-Mir-1990-P1  Pdu-Mir-1990-P1  War-Mir-1990-P1 
Node of Origin (locus) E. fetida
Node of Origin (family) Lophotrochozoa
Genome context
(Efe_combined)		 Efet.01.219023: 2496-2554 [+]
Precursor
(pre-Mir +30nt flank)
UCUGUUACGUCUGAAAACUCAAAGGCAGCCUGUAAGUUUAUAUAGUCCCACAGUUUGCUGAAGAACUCGGGACUACAUAGAUUUACGCGGUGCUUCUGACAGAAUCAACAGCGUGCAGA
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Structure
        10          20        30         40        50         
UCUGUUACGUCUGAAAAC--|  A     G  -           A       AC   UUGC 
                    UCA AGGCA CC UGUAAGUUUAU UAGUCCC  AGU    U
                    AGU UUCGU GG GCAUUUAGAUA AUCAGGG  UCA    G
AGACGUGCGACAACUAAGAC^  C     -  C           C       C-   AGAA 
       110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-1990-o1_5p*
mirBase accessionNone
Sequence 
0- UGUAAGUUUAUAUAGUCCCACAGU -24
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Mature sequence

Efe-Mir-1990-o1_3p
mirBase accessionNone
Sequence 
36- UCGGGACUACAUAGAUUUACGCG -59
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