MirGeneDB ID | Efe-Mir-1990-P2 |
Family name |
MIR-1990 (all species) |
Seed |
GUAAGUU |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-1990-o1
Efe-Mir-1990-P1
|
Orthologues |
Agr-Mir-1990-P2
Cte-Mir-1990-P2
Cte-Mir-1990-P2-as
Eba-Mir-1990-P2
Hru-Mir-1990-P2
Lan-Mir-1990-P2
Lgi-Mir-1990-P2
Mgi-Mir-1990-P2
Mom-Mir-1990-P2
Npo-Mir-1990-P2
Ofu-Mir-1990-P2
Pdu-Mir-1990-P2
Pdu-Mir-1990-P2-as
Pve-Mir-1990-P2a1
Pve-Mir-1990-P2a2
Pve-Mir-1990-P2b
Pve-Mir-1990-P2c
Pve-Mir-1990-P2d
Pve-Mir-1990-P2e
Rph-Mir-1990-P2
War-Mir-1990-P2
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (Efe_combined) |
scaffold3172-size40789: 4275-4334 [-]
|
Precursor (pre-Mir +30nt flank) |
ACUGAUUCGUCGAUGCGUUGGAUGCGAAGUUGUAAGUUGACAUAGUCCCAGGAUACGGGAAUGAAACCCGGGACUUUAGCAACUUCCAGCUCGUCAUCCGAUCCACAGCGUUCCCCAUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACUGAUUCGUCGAUGCG-- -| A U ACAU A AUACGG
UUGGAUG CGA GUUG AAGUUG AGUCCC GG G
AGCCUAC GCU CGAC UUCAAC UCAGGG CC A
CCUACCCCUUGCGACACCU U^ - C GAUU C AAAGUA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-1990-P2_5p |
mirBase accession | None |
Sequence |
0- UGUAAGUUGACAUAGUCCCAGG -22
Get sequence
|
Star sequence |
Efe-Mir-1990-P2_3p* |
mirBase accession | None |
Sequence |
38- CGGGACUUUAGCAACUUCCAGC -60
Get sequence
|