MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-1990-P2

Family name MIR-1990 (all species)
Seed GGGACUA
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Efe-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mgi-Mir-1990-P2  Mom-Mir-1990-P2  Npo-Mir-1990-P2  Ofu-Mir-1990-P2  Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as  Pve-Mir-1990-P2a1  Pve-Mir-1990-P2a2  Pve-Mir-1990-P2b  Pve-Mir-1990-P2c  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e  Rph-Mir-1990-P2  War-Mir-1990-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000006.1: 52829075-52829131 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUUCCAGCGAUAUUUGGGUUGCACGUGCAGUAAGUUGAUGGGGUCCCAGGUUGUCUAUAAUCCCGGGACUACGUCAACUACUUGCUCGUGCAUUCCGUGGCAACUACAACUACGA
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Structure
        10          20        30         40        50        
UCAUUCCAGCGAUAUUU--  GU      U  -|   A       GG     A  UUGUC 
                   GG  UGCACG GC AGUA GUUGAUG  GUCCC GG     \
                   CC  ACGUGC CG UCAU CAACUGC  CAGGG CC     U
AGCAUCAACAUCAACGGUG  UU      U  U^   -       AU     C  UAAUA 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ha Ha
Star sequence

Hru-Mir-1990-P2_5p*
mirBase accessionNone
Sequence 
0- AGUAAGUUGAUGGGGUCCCAGG -22
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Mature sequence

Hru-Mir-1990-P2_3p
mirBase accessionNone
Sequence 
35- CGGGACUACGUCAACUACUUGC -57
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