MirGeneDB 3.0

MirGeneDB ID

Hru-Mir-1990-P2

Family name MIR-1990 (all species)
Seed GGGACUA
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Efe-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mgi-Mir-1990-P2  Mom-Mir-1990-P2  Npo-Mir-1990-P2  Ofu-Mir-1990-P2  Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as  Pve-Mir-1990-P2a1  Pve-Mir-1990-P2a2  Pve-Mir-1990-P2b  Pve-Mir-1990-P2c  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e  Rph-Mir-1990-P2  War-Mir-1990-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)
JALGQA010000006.1: 52829075-52829131 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUUCCAGCGAUAUUUGGGUUGCACGUGCAGUAAGUUGAUGGGGUCCCAGGUUGUCUAUAAUCCCGGGACUACGUCAACUACUUGCUCGUGCAUUCCGUGGCAACUACAACUACGA
Get precursor sequence
Structure
        10          20        30         40        50        
UCAUUCCAGCGAUAUUU--  GU      U  -|   A       GG     A  UUGUC 
                   GG  UGCACG GC AGUA GUUGAUG  GUCCC GG     \
                   CC  ACGUGC CG UCAU CAACUGC  CAGGG CC     U
AGCAUCAACAUCAACGGUG  UU      U  U^   -       AU     C  UAAUA 
     110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To To
Star sequence

Hru-Mir-1990-P2_5p*

mirBase accessionNone
Sequence
0- AGUAAGUUGAUGGGGUCCCAGG -22
Get sequence
Mature sequence

Hru-Mir-1990-P2_3p

mirBase accessionNone
Sequence
35- CGGGACUACGUCAACUACUUGC -57
Get sequence