MirGeneDB ID | Hru-Mir-1990-P2 |
Family name |
MIR-1990 (all species) |
Seed |
GGGACUA |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-1990-P2
Cte-Mir-1990-P2
Cte-Mir-1990-P2-as
Eba-Mir-1990-P2
Efe-Mir-1990-P2
Lan-Mir-1990-P2
Lgi-Mir-1990-P2
Mgi-Mir-1990-P2
Mom-Mir-1990-P2
Npo-Mir-1990-P2
Ofu-Mir-1990-P2
Pdu-Mir-1990-P2
Pdu-Mir-1990-P2-as
Pve-Mir-1990-P2a1
Pve-Mir-1990-P2a2
Pve-Mir-1990-P2b
Pve-Mir-1990-P2c
Pve-Mir-1990-P2d
Pve-Mir-1990-P2e
Rph-Mir-1990-P2
War-Mir-1990-P2
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000006.1: 52829075-52829131 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAUUCCAGCGAUAUUUGGGUUGCACGUGCAGUAAGUUGAUGGGGUCCCAGGUUGUCUAUAAUCCCGGGACUACGUCAACUACUUGCUCGUGCAUUCCGUGGCAACUACAACUACGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAUUCCAGCGAUAUUU-- GU U -| A GG A UUGUC
GG UGCACG GC AGUA GUUGAUG GUCCC GG \
CC ACGUGC CG UCAU CAACUGC CAGGG CC U
AGCAUCAACAUCAACGGUG UU U U^ - AU C UAAUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hru-Mir-1990-P2_5p* |
mirBase accession | None |
Sequence |
0- AGUAAGUUGAUGGGGUCCCAGG -22
Get sequence
|
Mature sequence |
Hru-Mir-1990-P2_3p |
mirBase accession | None |
Sequence |
35- CGGGACUACGUCAACUACUUGC -57
Get sequence
|