MirGeneDB 3.0
MirGeneDB ID

Pve-Mir-1990-P2c

Family name MIR-1990 (all species)
Seed AGGACUA
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues Pve-Mir-1990-P2a1  Pve-Mir-1990-P2a2  Pve-Mir-1990-P2b  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e 
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Efe-Mir-1990-P2  Hru-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mgi-Mir-1990-P2  Mom-Mir-1990-P2  Npo-Mir-1990-P2  Ofu-Mir-1990-P2  Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as  Rph-Mir-1990-P2  War-Mir-1990-P2 
Node of Origin (locus) Dentaliidae
Node of Origin (family) Lophotrochozoa
Genome context
(PVE_manual_microRNAloci)		 CM062289.1:352802959-352803215: 101-157 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCAACAGAGACUGAUAGGAUUCGUGCGCUGUAAGUUGUUGGGGUCCCAGGUGUACUCGAUUCCCAGGACUACUUCAACUACUCGCGCAAGUGUCUCAGAAAGCAACCAAUCAGGC
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Structure
        10          20        30         40        50        
CAGCAACAGAGACUGAUA--    UCG     U-|  A    UUGG     CA  UGUAC 
                    GGAU   UGCGC  GUA GUUG    GGUCC  GG     \
                    UCUG   ACGCG  CAU CAAC    UCAGG  CC     U
CGGACUAACCAACGAAAGAC    UGA     CU^  -    UUCA     AC  UUAGC 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Pve-Mir-1990-P2c_5p*
mirBase accessionNone
Sequence 
0- UGUAAGUUGUUGGGGUCCCAGG -22
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Mature sequence

Pve-Mir-1990-P2c_3p
mirBase accessionNone
Sequence 
35- CAGGACUACUUCAACUACUCGC -57
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