MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1990-P2

Family name MIR-1990 (all species)
Seed GUAAGUU
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-1990-P1  Pdu-Mir-1990-P2-as 
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Efe-Mir-1990-P2  Hru-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mgi-Mir-1990-P2  Mom-Mir-1990-P2  Npo-Mir-1990-P2  Ofu-Mir-1990-P2  Pve-Mir-1990-P2a1  Pve-Mir-1990-P2a2  Pve-Mir-1990-P2b  Pve-Mir-1990-P2c  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e  Rph-Mir-1990-P2  War-Mir-1990-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000010.1: 42046324-42046380 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUGAAUGCUGCUGUAGCAAACCUUGGGUUGUAAGUUGACAUAGUCCCAGGGAAUAAACACACCCGGGACUACGUUAACUUCCAGCUCAUGGUAAGCUAUUUCAUCUGAAGAAGGA
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Structure
        10          20        30        40        50        
UGUUGAAUGCUGCUGUA--| AA   U       U        A       A  GAAUA 
                   GC  ACC UGGGUUG AAGUUGAC UAGUCCC GG     \
                   CG  UGG ACUCGAC UUCAAUUG AUCAGGG CC     A
AGGAAGAAGUCUACUUUAU^ AA   U       C        C       C  ACACA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1990-P2_5p
mirBase accessionNone
Sequence 
0- UGUAAGUUGACAUAGUCCCAGG -22
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Star sequence

Pdu-Mir-1990-P2_3p*
mirBase accessionNone
Sequence 
35- CGGGACUACGUUAACUUCCAGC -57
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