MirGeneDB 3.0

MirGeneDB ID

Npo-Mir-1990-P2

Family name MIR-1990 (all species)
Seed GGGACUA
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Efe-Mir-1990-P2  Hru-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mgi-Mir-1990-P2  Mom-Mir-1990-P2  Ofu-Mir-1990-P2  Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as  Pve-Mir-1990-P2a1  Pve-Mir-1990-P2a2  Pve-Mir-1990-P2b  Pve-Mir-1990-P2c  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e  Rph-Mir-1990-P2  War-Mir-1990-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_018389105_NPO)
JACATO010001038.1: 22720-22775 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAUUCUAAUGCAGACAGGAAGCACGCGCAGUAAGUUGAUGGGGUCCCAGGUUGCAAACAAUCCCGGGACUACGUCAACUGCUGGCGAGUGCUUCCGCCAACUACGUCGUCGUCU
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Structure
        10         20         30        40        50        
UUCAUUCUAAUGCAGACA-        G  -|    A       GG     A  UUGCA 
                   GGAAGCAC CG CAGUA GUUGAUG  GUCCC GG     \
                   CCUUCGUG GC GUCGU CAACUGC  CAGGG CC     A
UCUGCUGCUGCAUCAACCG        A  G^    -       AU     C  UAACA 
    110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Npo-Mir-1990-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUAAGUUGAUGGGGUCCCAGG -22
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Mature sequence

Npo-Mir-1990-P2_3p (predicted)

mirBase accessionNone
Sequence
35- CGGGACUACGUCAACUGCUGG -56
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