Mir-1990-P2

MirGeneDB ID

Ofu-Mir-1990-P2

Family name

MIR-1990 (all species)

Seed

GGGACUA

Species

Tubeworm (Owenia fusiformis)

MiRBase ID

Paralogues

Ofu-Mir-1990-P1

Orthologues

Agr-Mir-1990-P2 Cte-Mir-1990-P2 Cte-Mir-1990-P2-as Eba-Mir-1990-P2 Efe-Mir-1990-P2 Hru-Mir-1990-P2 Lan-Mir-1990-P2 Lgi-Mir-1990-P2 Mgi-Mir-1990-P2 Mom-Mir-1990-P2 Npo-Mir-1990-P2 Pdu-Mir-1990-P2 Pdu-Mir-1990-P2-as Pve-Mir-1990-P2a1 Pve-Mir-1990-P2a2 Pve-Mir-1990-P2b Pve-Mir-1990-P2c Pve-Mir-1990-P2d Pve-Mir-1990-P2e Rph-Mir-1990-P2 War-Mir-1990-P2

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Lophotrochozoa

Genome context
(GCA_903813345.2_Owenia)

CAIIXF020000006.1: 29791317-29791373 [-]

Precursor
(pre-Mir +30nt flank)

UGCUAUGGAGACAUCGAGGCGACUCAGGGCAGUAAGUUGAUAUAGUCCCAGGAUCUGAUGCCACCCGGGACUACUUUAACUUACAGCUCGAGAGUCCGCCGUUGAACAGCAUACAGA

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Structure

        10        20          30        40        50        
UGCUAUGGAGACAUCGAG  -     A-|   A         UA       A  AUCUG 
                  GC GACUC  GGGC GUAAGUUGA  UAGUCCC GG     \
                  CG CUGAG  CUCG CAUUCAAUU  AUCAGGG CC     A
AGACAUACGACAAGUUGC  C     AG^   A         UC       C  ACCGU 
     110       100        90        80        70        60

Deep sequencing

Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

Tissue expression

Ow	Ow

Star sequence

Ofu-Mir-1990-P2_5p* (predicted)

mirBase accession

None

Sequence

0- AGUAAGUUGAUAUAGUCCCAGG -22

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Mature sequence

Ofu-Mir-1990-P2_3p

mirBase accession

None

Sequence

35- CGGGACUACUUUAACUUACAGC -57

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