| MirGeneDB ID | Ofu-Mir-1990-P1 |
|---|
| Family name |
MIR-1990 (all species) |
|---|
| Seed |
AAGUUGA |
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| Species |
tubeworm (Owenia fusiformis) |
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| MiRBase ID |
|
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| Paralogues |
Ofu-Mir-1990-P2
|
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| Orthologues |
Agr-Mir-1990-P1
Cte-Mir-1990-P1
Eba-Mir-1990-P1
Efe-Mir-1990-o1
Efe-Mir-1990-P1
Lan-Mir-1990-P1
Pdu-Mir-1990-P1
War-Mir-1990-P1
|
|---|
| Node of Origin (locus) |
Lophotrochozoa
|
|---|
| Node of Origin (family) |
Lophotrochozoa
|
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Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000006.1: 29792074-29792131 [-]
|
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Precursor
(pre-Mir +30nt flank) |
UUGAUAAAUUGUUAUUUGGUGGAUAACAUGUAAGUUGACGUAGUCCCAGGGUUGUCUUUUUCACAACUGGAGAUUACGCCAGCUUGUCUGUUGUGCGCCUCAACCAACCGGACAAUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGAUAAAUUGUUAUUU-- G UG A -| GGUUGUCU
GGUG AUAACA UAAGUUG CGUAGUC CCAG \
CCGC UGUUGU GUUCGAC GCAUUAG GGUC U
UCUAACAGGCCAACCAACU G CU C A^ AACACUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ofu-Mir-1990-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAAGUUGACGUAGUCCCAGGGUU -23
Get sequence
|
|---|
| Star sequence |
Ofu-Mir-1990-P1_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- CUGGAGAUUACGCCAGCUUGUC -58
Get sequence
|
|---|
