MirGeneDB 3.0

MirGeneDB ID

Agr-Mir-1990-P1

Family name MIR-1990 (all species)
Seed CGGGACU
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues Agr-Mir-1990-P2 
Orthologues Cte-Mir-1990-P1  Eba-Mir-1990-P1  Efe-Mir-1990-o1  Efe-Mir-1990-P1  Lan-Mir-1990-P1  Ofu-Mir-1990-P1  Pdu-Mir-1990-P1  War-Mir-1990-P1 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)
JABBOT010000001.1: 14814918-14814979 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGGGUACAUUCACCUUUCGGGGCCUUUCUGUAAAUUGACAUAGUCCCUGGGUUAGUUAAAAAGAAACUCGGGACUGCGUCAAUUUAAGGAUAGACCACGAAACAGUCAACACCUAUAAGA
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACAGGGUACAUUCACCU--|   G  C  U   G         A       U    UAGUUA 
                   UUCG GG CU UCU UAAAUUGAC UAGUCCC GGGU      \
                   AAGC CC GA AGG AUUUAACUG GUCAGGG CUCA      A
AGAAUAUCCACAACUGACA^   A  A  U   A         C       -    AAGAAA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Agr-Mir-1990-P1_5p*

mirBase accessionNone
Sequence
0- UGUAAAUUGACAUAGUCCCUGGGU -24
Get sequence
Mature sequence

Agr-Mir-1990-P1_3p

mirBase accessionNone
Sequence
39- UCGGGACUGCGUCAAUUUAAGGA -62
Get sequence