MirGeneDB ID | Agr-Mir-1990-P1 |
Family name |
MIR-1990 (all species) |
Seed |
CGGGACU |
Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
MiRBase ID |
|
Paralogues |
Agr-Mir-1990-P2
|
Orthologues |
Cte-Mir-1990-P1
Eba-Mir-1990-P1
Efe-Mir-1990-o1
Efe-Mir-1990-P1
Lan-Mir-1990-P1
Ofu-Mir-1990-P1
Pdu-Mir-1990-P1
War-Mir-1990-P1
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_016165875.1_ASM1616587v1_Acanthopleura_granula) |
JABBOT010000001.1: 14814918-14814979 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAGGGUACAUUCACCUUUCGGGGCCUUUCUGUAAAUUGACAUAGUCCCUGGGUUAGUUAAAAAGAAACUCGGGACUGCGUCAAUUUAAGGAUAGACCACGAAACAGUCAACACCUAUAAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAGGGUACAUUCACCU--| G C U G A U UAGUUA
UUCG GG CU UCU UAAAUUGAC UAGUCCC GGGU \
AAGC CC GA AGG AUUUAACUG GUCAGGG CUCA A
AGAAUAUCCACAACUGACA^ A A U A C - AAGAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Agr-Mir-1990-P1_5p* |
mirBase accession | None |
Sequence |
0- UGUAAAUUGACAUAGUCCCUGGGU -24
Get sequence
|
Mature sequence |
Agr-Mir-1990-P1_3p |
mirBase accession | None |
Sequence |
39- UCGGGACUGCGUCAAUUUAAGGA -62
Get sequence
|