| MirGeneDB ID | Eba-Mir-1990-P1 |
|---|
| Family name |
MIR-1990 (all species) |
|---|
| Seed |
CGGGACU |
|---|
| Species |
Epimenia (Solenogaster) (Epimenia babai) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Eba-Mir-1990-P2
|
|---|
| Orthologues |
Agr-Mir-1990-P1
Cte-Mir-1990-P1
Efe-Mir-1990-o1
Efe-Mir-1990-P1
Lan-Mir-1990-P1
Ofu-Mir-1990-P1
Pdu-Mir-1990-P1
War-Mir-1990-P1
|
|---|
| Node of Origin (locus) |
Lophotrochozoa
|
|---|
| Node of Origin (family) |
Lophotrochozoa
|
|---|
Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia) |
WURV02000011.1: 17965-18024 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACUCGAUGGUAUAUAAAAGCCUGGCCGGACUGUAAAUUGACAUAGUCCCUGGGUGUGUUCAGAAGACUCGGGACUGCGUCAAUUUAUGGGUUGGUCGACGGCUGACGUCGAAGCAGAAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACUCGAUGGUAUAUAAAA --| GA A U GUGUU
GCC UGGCCG CUGUAAAUUGAC UAGUCCC GGGU \
CGG GCUGGU GGUAUUUAACUG GUCAGGG CUCA C
CGAAGACGAAGCUGCAGU CA^ UG C - GAAGA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Eba-Mir-1990-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGUAAAUUGACAUAGUCCCUGGGU -24
Get sequence
|
|---|
| Mature sequence |
Eba-Mir-1990-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UCGGGACUGCGUCAAUUUAUGGG -60
Get sequence
|
|---|
