MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-1990-P1

Family name MIR-1990 (all species)
Seed AAGUUGA
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-1990b
Paralogues Cte-Mir-1990-P2 
Orthologues Cgi-Mir-1990  Efe-Mir-1990-P1  Lan-Mir-1990  Lgi-Mir-1990  Npo-Mir-1990 
Node of Origin (locus) Annelida
Node of Origin (family) Lophotrochozoa
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_12: 600050-600112 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1990-P1)
Mir-1990-P1 CAPTEscaffold_12: 600050-600112 [+] Ensembl
Mir-2692 CAPTEscaffold_12: 600189-600249 [+] Ensembl
Mir-1990-P2 CAPTEscaffold_12: 606811-606875 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCCAGUCCUCCUCUGCUCACACAGUGUCUAAGUUGACGUAGUCCCAGGGUUUUCACAAUCUAUUCAAGACUUGUGGUUACGUCAGCUUUGCCAUUGUUGGGCACUGCUUCUUCCCCUGCUU
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Structure
        10           20        30        40         50        60 
UCUCCAGUCCUCCUCUG---|   C      UCU            U  -    GUUUUCACAA 
                    CUCA ACAGUG   AAGUUGACGUAG CC CAGG          \
                    GGGU UGUUAC   UUCGACUGCAUU GG GUUC          U
UUCGUCCCCUUCUUCGUCAC^   -      CGU            -  U    AGAACUUAUC 
 120       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cte-Mir-1990-P1_5p

mirBase accessionMIMAT0013547
Sequence
0- UAAGUUGACGUAGUCCCAGGGU -22
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Star sequence

Cte-Mir-1990-P1_3p* (predicted)

mirBase accessionNone
Sequence
40- ACUUGUGGUUACGUCAGCUUUGC -63
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