MirGeneDB ID | Pve-Mir-1990-P2d |
Family name |
MIR-1990 (all species) |
Seed |
GUAAGUU |
Species |
Vernerds tusk shell (Pictodentalium vernedei) |
MiRBase ID |
|
Paralogues |
Pve-Mir-1990-P2a1
Pve-Mir-1990-P2a2
Pve-Mir-1990-P2b
Pve-Mir-1990-P2c
Pve-Mir-1990-P2e
|
Orthologues |
Agr-Mir-1990-P2
Cte-Mir-1990-P2
Cte-Mir-1990-P2-as
Eba-Mir-1990-P2
Efe-Mir-1990-P2
Hru-Mir-1990-P2
Lan-Mir-1990-P2
Lgi-Mir-1990-P2
Mgi-Mir-1990-P2
Mom-Mir-1990-P2
Npo-Mir-1990-P2
Ofu-Mir-1990-P2
Pdu-Mir-1990-P2
Pdu-Mir-1990-P2-as
Rph-Mir-1990-P2
War-Mir-1990-P2
|
Node of Origin (locus) |
Dentaliidae
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (PVE_manual_microRNAloci) |
CM062289.1:352800122-352800378: 101-157 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCAGCAACAGAGAGGGACGAUCACGUACGCUGUAAGUUGUAGGGGUCCCAGGUAUAUACAGGUUCUGGGACUACUUCAACUACACGCGGAAGUGUUUUUAAAAUCUACAACUAGGGU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAGCAACAGAGAGGGACGAU-- GUA -| A U GG UAUAU
CAC CGC UGUA GUUG AG GUCCCAGG \
GUG GCG ACAU CAAC UC CAGGGUCU A
UGGGAUCAACAUCUAAAAUUUUU AAG C^ - U AU UGGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pve-Mir-1990-P2d_5p |
mirBase accession | None |
Sequence |
0- UGUAAGUUGUAGGGGUCCCAGG -22
Get sequence
|
Star sequence |
Pve-Mir-1990-P2d_3p* |
mirBase accession | None |
Sequence |
35- UGGGACUACUUCAACUACACGC -57
Get sequence
|