MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-1986

Family name MIR-1986 (all species)
Seed GGAUUUC
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1986  Cte-Mir-1986  Eba-Mir-1986  Efe-Mir-1986  Hru-Mir-1986-P1  Hru-Mir-1986-P2  Lan-Mir-1986  Lgi-Mir-1986  Lhy-Mir-1986  Mgi-Mir-1986  Mom-Mir-1986  Npo-Mir-1986  Obi-Mir-1986  Ofu-Mir-1986  Ovu-Mir-1986  Pdu-Mir-1986  Pve-Mir-1986-P3  Pve-Mir-1986-P4  Pve-Mir-1986-P5  War-Mir-1986 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(Ruditapes_GCA_009026015)		 CM018529.1: 4837237-4837295 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGCUAUGGAUAAUGUUUCUAGUUAAGACCGCGGGUCAUGGGGAACACACUCUGUGUUAUUGAUGGUGGAUUUCCCAAGAUCCGUGAUCGUGGCUAGUUGUAUAUCUACACAAACAUA
Get precursor sequence
Structure
        10          20        30        40        50         
UGAGCUAUGGAUAAUGUUU--|      A  C        A       CA    CUGUGU 
                     CUAGUUA GA CGCGGGUC UGGGGAA  CACU      \
                     GAUCGGU CU GUGCCUAG ACCCUUU  GUGG      U
AUACAAACACAUCUAUAUGUU^      G  A        A       AG    UAGUUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Rph-Mir-1986_5p*
mirBase accessionNone
Sequence 
0- CGCGGGUCAUGGGGAACACACU -22
Get sequence
Mature sequence

Rph-Mir-1986_3p
mirBase accessionNone
Sequence 
37- UGGAUUUCCCAAGAUCCGUGAU -59
Get sequence