| MirGeneDB ID | Rph-Mir-1986 |
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| Family name |
MIR-1986 (all species) |
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| Seed |
GGAUUUC |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Agr-Mir-1986
Cte-Mir-1986
Eba-Mir-1986
Efe-Mir-1986
Hru-Mir-1986-P1
Hru-Mir-1986-P2
Lan-Mir-1986
Lgi-Mir-1986
Lhy-Mir-1986
Mgi-Mir-1986
Mom-Mir-1986
Npo-Mir-1986
Obi-Mir-1986
Ofu-Mir-1986
Ovu-Mir-1986
Pdu-Mir-1986
Pve-Mir-1986-P3
Pve-Mir-1986-P4
Pve-Mir-1986-P5
War-Mir-1986
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| Node of Origin (locus) |
Lophotrochozoa
|
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| Node of Origin (family) |
Lophotrochozoa
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Genome context
(Ruditapes_GCA_009026015) |
CM018529.1: 4837237-4837295 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAGCUAUGGAUAAUGUUUCUAGUUAAGACCGCGGGUCAUGGGGAACACACUCUGUGUUAUUGAUGGUGGAUUUCCCAAGAUCCGUGAUCGUGGCUAGUUGUAUAUCUACACAAACAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAGCUAUGGAUAAUGUUU--| A C A CA CUGUGU
CUAGUUA GA CGCGGGUC UGGGGAA CACU \
GAUCGGU CU GUGCCUAG ACCCUUU GUGG U
AUACAAACACAUCUAUAUGUU^ G A A AG UAGUUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Star sequence |
Rph-Mir-1986_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGCGGGUCAUGGGGAACACACU -22
Get sequence
|
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| Mature sequence |
Rph-Mir-1986_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGGAUUUCCCAAGAUCCGUGAU -59
Get sequence
|
|---|
