MirGeneDB ID | Hru-Mir-1986-P1 |
Family name |
MIR-1986 (all species) |
Seed |
GGAUUUC |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
|
Paralogues |
Hru-Mir-1986-P2
|
Orthologues |
Agr-Mir-1986
Cte-Mir-1986
Eba-Mir-1986
Efe-Mir-1986
Lan-Mir-1986
Lgi-Mir-1986
Lhy-Mir-1986
Mgi-Mir-1986
Mom-Mir-1986
Npo-Mir-1986
Obi-Mir-1986
Ofu-Mir-1986
Ovu-Mir-1986
Pdu-Mir-1986
Rph-Mir-1986
War-Mir-1986
|
Node of Origin (locus) |
H. rufescens
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000006.1: 52828715-52828771 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCACAGAAGAAGAUGGUCGGUGGUUGUGGGCGCGGGUCGUGGGGGCGCCACAGUCUAUUUGACAGUGGAUUUCCCAAGAUCCGUGAUCGCAAUGUCGCCGCCUACGUCAAACAUUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCACAGAAGAAGAUGGUC --| GG G CG AGUCUA
GGUG GUUGUG CGCGGGUC UGGGGG CCAC \
CCGC UAACGC GUGCCUAG ACCCUU GGUG U
CGUUACAAACUGCAUCCG UG^ UA A UA ACAGUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hru-Mir-1986-P1_5p* |
mirBase accession | None |
Sequence |
0- CGCGGGUCGUGGGGGCGCCACA -22
Get sequence
|
Mature sequence |
Hru-Mir-1986-P1_3p |
mirBase accession | None |
Sequence |
35- UGGAUUUCCCAAGAUCCGUGAU -57
Get sequence
|