MirGeneDB 3.0

MirGeneDB ID

Efe-Mir-1986

Family name MIR-1986 (all species)
Seed GGAUUUC
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1986  Cte-Mir-1986  Eba-Mir-1986  Hru-Mir-1986-P1  Hru-Mir-1986-P2  Lan-Mir-1986  Lgi-Mir-1986  Lhy-Mir-1986  Mgi-Mir-1986  Mom-Mir-1986  Npo-Mir-1986  Obi-Mir-1986  Ofu-Mir-1986  Ovu-Mir-1986  Pdu-Mir-1986  Pve-Mir-1986-P3  Pve-Mir-1986-P4  Pve-Mir-1986-P5  Rph-Mir-1986  War-Mir-1986 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(Efe_combined)
Efet.01.639074: 392-453 [+]
Precursor
(pre-Mir +30nt flank)
GUCGUCACAGAGAGAGUGGAAGAUGGCGGUUAGGGAUUUUGAGGAAACCGCACGUCCAUCUAACCAGUUGUGGAUUUCUCAUGAUCCUUAAUCGCUUCUUCCACACAUCGAGUUCAAGCGAA
Get precursor sequence
Structure
        10           20        30        40        50        60
GUCGUCACAGAGAGAGU---|     U              U       A     CGUCCAU 
                    GGAAGA GGCGGUUAGGGAUU UGAGGAA CCGCA       C
                    CCUUCU UCGCUAAUUCCUAG ACUCUUU GGUGU       U
AAGCGAACUUGAGCUACACA^     -              U       A     UGACCAA 
120       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Efe-Mir-1986_5p* (predicted)

mirBase accessionNone
Sequence
0- UAGGGAUUUUGAGGAAACCGCA -22
Get sequence
Mature sequence

Efe-Mir-1986_3p (predicted)

mirBase accessionNone
Sequence
40- UGGAUUUCUCAUGAUCCUUAAU -62
Get sequence