| MirGeneDB ID | Efe-Mir-1986 |
|---|
| Family name |
MIR-1986 (all species) |
|---|
| Seed |
GGAUUUC |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cgi-Mir-1986
Cte-Mir-1986
Lan-Mir-1986
Lgi-Mir-1986
Npo-Mir-1986
Obi-Mir-1986
Ovu-Mir-1986
|
|---|
| Node of Origin (locus) |
Lophotrochozoa
|
|---|
| Node of Origin (family) |
Lophotrochozoa
|
|---|
Genome context
(Efe_combined) |
Efet.01.639074: 392-453 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUCGUCACAGAGAGAGUGGAAGAUGGCGGUUAGGGAUUUUGAGGAAACCGCACGUCCAUCUAACCAGUUGUGGAUUUCUCAUGAUCCUUAAUCGCUUCUUCCACACAUCGAGUUCAAGCGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUCGUCACAGAGAGAGU---| U U A CGUCCAU
GGAAGA GGCGGUUAGGGAUU UGAGGAA CCGCA C
CCUUCU UCGCUAAUUCCUAG ACUCUUU GGUGU U
AAGCGAACUUGAGCUACACA^ - U A UGACCAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-1986_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UAGGGAUUUUGAGGAAACCGCA -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-1986_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- UGGAUUUCUCAUGAUCCUUAAU -62
Get sequence
|
|---|
