MirGeneDB ID | Pdu-Mir-1986 |
Family name |
MIR-1986 (all species) |
Seed |
AAGGAUC |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Agr-Mir-1986
Cte-Mir-1986
Eba-Mir-1986
Efe-Mir-1986
Hru-Mir-1986-P1
Hru-Mir-1986-P2
Lan-Mir-1986
Lgi-Mir-1986
Lhy-Mir-1986
Mgi-Mir-1986
Mom-Mir-1986
Npo-Mir-1986
Obi-Mir-1986
Ofu-Mir-1986
Ovu-Mir-1986
Pve-Mir-1986-P3
Pve-Mir-1986-P4
Pve-Mir-1986-P5
Rph-Mir-1986
War-Mir-1986
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000010.1: 42047758-42047813 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUAUUUCCUUCCUGACCAAUCUGCUGCAUUCAAGGAUCCUGGGGAAGCCCCCUUCCAUCAAUGGUGGAUUUCCCAUGAUCCGUAACUGUAGUCAGUUUGAGCCUUCUAAAAUGACG
Get precursor sequence
|
Structure | 10 20 30 40 50
CUAUUUCCUUCCUGACCAAU- -| UUCAA C G C UUCC
CUG CUGCA GGAUC UGGGGAA CC CC A
GAC GAUGU CCUAG ACCCUUU GG GG U
GCAGUAAAAUCUUCCGAGUUU U^ CAAUG U A U UAAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Mature sequence |
Pdu-Mir-1986_5p |
mirBase accession | None |
Sequence |
0- CAAGGAUCCUGGGGAAGCCCCC -22
Get sequence
|
Co-mature sequence |
Pdu-Mir-1986_3p |
mirBase accession | None |
Sequence |
34- UGGAUUUCCCAUGAUCCGUAAC -56
Get sequence
|