MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-184

Family name MIR-184 (all species)
Seed GGACGGA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Aae-Mir-184  Aca-Mir-184  Aga-Mir-184  Agr-Mir-184  Ami-Mir-184  Asu-Mir-184  Ava-Mir-184-P41  Ava-Mir-184-P42  Bfl-Mir-184  Bge-Mir-184  Bko-Mir-184  Bla-Mir-184  Bpl-Mir-184  Bta-Mir-184  Cfa-Mir-184  Cin-Mir-184  Cja-Mir-184  Cli-Mir-184  Cmi-Mir-184  Cpi-Mir-184  Cpo-Mir-184  Csc-Mir-184-P24  Csc-Mir-184-P25  Cte-Mir-184-P16  Cte-Mir-184-P17  Dan-Mir-184  Dgr-Mir-184  Dlo-Mir-184  Dma-Mir-184  Dme-Mir-184  Dmo-Mir-184  Dno-Mir-184  Dpu-Mir-184  Dre-Mir-184-P1  Dre-Mir-184-P2  Dsi-Mir-184  Dya-Mir-184  Eba-Mir-184  Eca-Mir-184  Efe-Mir-184-o1  Efe-Mir-184-o2  Efe-Mir-184-o3  Efe-Mir-184-o4  Egr-Mir-184  Esc-Mir-184  Ete-Mir-184  Gga-Mir-184  Gja-Mir-184  Gmo-Mir-184-P1  Gmo-Mir-184-P2  Gpa-Mir-184  Gsa-Mir-184  Gsp-Mir-184  Hme-Mir-184  Hru-Mir-184-o5  Hru-Mir-184-o6  Hsa-Mir-184  Isc-Mir-184  Laf-Mir-184  Lan-Mir-184  Lch-Mir-184  Lgi-Mir-184-P5  Lgi-Mir-184-P6  Lhy-Mir-184  Llo-Mir-184-P32  Llo-Mir-184-P33  Llo-Mir-184-P34  Llo-Mir-184-P35  Llo-Mir-184-P36  Llo-Mir-184-P37  Llo-Mir-184-P38  Llo-Mir-184-P39  Llo-Mir-184-P40  Loc-Mir-184  Lpo-Mir-184-P18  Lpo-Mir-184-P19  Lpo-Mir-184-P20  Lpo-Mir-184-P21  Lpo-Mir-184-P22  Lpo-Mir-184-P23  Mal-Mir-184-P1  Mal-Mir-184-P2  Mdo-Mir-184  Mgi-Mir-184-P7  Mgi-Mir-184-P8a  Mgi-Mir-184-P8b  Mgi-Mir-184-P8c  Mgi-Mir-184-P8d  Mgi-Mir-184-P9  Mgi-Mir-184-P10  Mgi-Mir-184-P11  Mgi-Mir-184-P12  Mgi-Mir-184-P13a  Mgi-Mir-184-P13b  Mgi-Mir-184-P14  Mgi-Mir-184-P15a1  Mgi-Mir-184-P15a2  Mgi-Mir-184-P15a3  Mgi-Mir-184-P15a4  Mgi-Mir-184-P15a5  Mgi-Mir-184-P15a6  Mgi-Mir-184-P15a7  Mgi-Mir-184-P15b  Mgi-Mir-184-P15c  Mgi-Mir-184-P15d  Mgi-Mir-184-P15e1  Mgi-Mir-184-P15e2  Mgi-Mir-184-P15e3  Mgi-Mir-184-P15f  Mgi-Mir-184-P15g1  Mgi-Mir-184-P15g2  Mgi-Mir-184-P15g3  Mgi-Mir-184-P15h  Mgi-Mir-184-P15i  Mgi-Mir-184-P15j  Mgi-Mir-184-P15k  Mgi-Mir-184-P15l1  Mgi-Mir-184-P15l2  Mgi-Mir-184-P15m  Mgi-Mir-184-P15n  Mgi-Mir-184-P15o  Mgi-Mir-184-P15p  Mgi-Mir-184-P15q  Mgi-Mir-184-P15r  Mgi-Mir-184-P15s  Mgi-Mir-184-P15t  Mgi-Mir-184-P15u  Mml-Mir-184  Mmr-Mir-184  Mmu-Mir-184  Mom-Mir-184  Neu-Mir-184  Npo-Mir-184  Oan-Mir-184  Obi-Mir-184-P26  Obi-Mir-184-P27  Ocu-Mir-184  Ofu-Mir-184  Ovu-Mir-184-P26  Ovu-Mir-184-P27  Pab-Mir-184  Pau-Mir-184  Pbv-Mir-184  Pca-Mir-184-P30  Pca-Mir-184-P31  Pcr-Mir-184-P43  Pcr-Mir-184-P44  Pcr-Mir-184-P45  Pdu-Mir-184  Pfl-Mir-184  Pma-Mir-184  Pmi-Mir-184  Pve-Mir-184  Rno-Mir-184  Sha-Mir-184  Sko-Mir-184  Sme-Mir-184-P28  Sme-Mir-184-P29  Sne-Mir-184  Snu-Mir-184  Spt-Mir-184  Spu-Mir-184  Sto-Mir-184  Tca-Mir-184  Tgu-Mir-184  Tni-Mir-184-P1  Tni-Mir-184-P2  Tur-Mir-184  War-Mir-184  Xla-Mir-184-P3  Xla-Mir-184-P4  Xtr-Mir-184 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Ruditapes_GCA_009026015)		 CM018539.1: 21939398-21939455 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUUCUUCUUCAAGAUUAUUUUCACUUUUCCUUGUCACUUUUUCGUCUCGUCUGUAAUAUUGUACUGGACGGAGAACUGAUAAGGGUUCGUGAAAAAAUAUUCUUCUAAUAAAUGGU
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Structure
        10          20        30        40        50        
GUUUUCUUCUUCAAGAUUA--|      UUU         C          C  CUGUA 
                     UUUUCAC   UCCUUGUCA UUUUUCGUCU GU     A
                     AAAAGUG   GGGAAUAGU AAGAGGCAGG CA     U
UGGUAAAUAAUCUUCUUAUAA^      CUU         C          U  UGUUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-184_5p*
mirBase accessionNone
Sequence 
0- CCUUGUCACUUUUUCGUCUCGU -22
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Mature sequence

Rph-Mir-184_3p
mirBase accessionNone
Sequence 
36- UGGACGGAGAACUGAUAAGGGU -58
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