Mir-184-P3

MirGeneDB ID

Xla-Mir-184-P3

Family name

MIR-184 (all species)

Seed

GGACGGA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-184-P4

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Efe-Mir-184-o3 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lhy-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Ofu-Mir-184 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tur-Mir-184 War-Mir-184 Xtr-Mir-184

Node of Origin (locus)

X. laevis

Node of Origin (family)

Nephrozoa

Genome context
(GCF_001663975.1_XLA_v2)

NC_030728.1: 109785671-109785732 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAUCCCUCAUCAGAUGCCAGUAUCACUUCCUUAUCACUUUUCCAGCCCAGCUUUUCAUGACAAACUGUUGGACGGAGAACUGAUAAGGCUGUGUGAUUGGCACAAUCUUCUGGAUGUUUC

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Structure

        10          20        30        40        50        60 
AAGAUCCCUCAUCAGAU--|     AU   UU        C      AGC     UUUUCAU 
                   GCCAGU  CAC  CCUUAUCA UUUUCC   CCAGC       \
                   CGGUUA  GUG  GGAAUAGU AAGAGG   GGUUG       G
CUUUGUAGGUCUUCUAACA^     GU   UC        C      CA-     UCAAACA 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-184-P3_5p*

mirBase accession

None

Sequence

0- CCUUAUCACUUUUCCAGCCCAGC -23

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Mature sequence

Xla-Mir-184-P3_3p

mirBase accession

None

Sequence

40- UGGACGGAGAACUGAUAAGGCU -62

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