MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-184-P28

Family name MIR-184 (all species)
Seed ACGGAGG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-184
Paralogues Sme-Mir-184-P29 
Orthologues Aae-Mir-184  Aca-Mir-184  Aga-Mir-184  Agr-Mir-184  Ami-Mir-184  Asu-Mir-184  Bfl-Mir-184  Bge-Mir-184  Bko-Mir-184  Bla-Mir-184  Bpl-Mir-184  Bta-Mir-184  Cfa-Mir-184  Cin-Mir-184  Cja-Mir-184  Cli-Mir-184  Cmi-Mir-184  Cpi-Mir-184  Cpo-Mir-184  Dan-Mir-184  Dgr-Mir-184  Dlo-Mir-184  Dma-Mir-184  Dme-Mir-184  Dmo-Mir-184  Dno-Mir-184  Dpu-Mir-184  Dsi-Mir-184  Dya-Mir-184  Eba-Mir-184  Eca-Mir-184  Egr-Mir-184  Esc-Mir-184  Ete-Mir-184  Gga-Mir-184  Gja-Mir-184  Gpa-Mir-184  Gsa-Mir-184  Gsp-Mir-184  Hme-Mir-184  Hsa-Mir-184  Isc-Mir-184  Laf-Mir-184  Lan-Mir-184  Lch-Mir-184  Lhy-Mir-184  Loc-Mir-184  Mdo-Mir-184  Mml-Mir-184  Mmr-Mir-184  Mmu-Mir-184  Mom-Mir-184  Neu-Mir-184  Npo-Mir-184  Oan-Mir-184  Ocu-Mir-184  Ofu-Mir-184  Pab-Mir-184  Pau-Mir-184  Pbv-Mir-184  Pdu-Mir-184  Pfl-Mir-184  Pma-Mir-184  Pmi-Mir-184  Pve-Mir-184  Rno-Mir-184  Rph-Mir-184  Sha-Mir-184  Sko-Mir-184  Sne-Mir-184  Snu-Mir-184  Spt-Mir-184  Spu-Mir-184  Sto-Mir-184  Tca-Mir-184  Tgu-Mir-184  Tur-Mir-184  War-Mir-184  Xtr-Mir-184 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Nephrozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000012_dd_Smes_g4_12: 7152795-7152862 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAAAAUGUACAAUUAAUGAUUUUCAUUAACUCCUUUGUGUAUCUCCGUUUCACAUUUAUUAUAUCAUUUAUACUGGACGGAGGUUUGCUAAGGAAUAUUUGAAAAUUGCGAACUACAAAUAUUAUCA
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Structure
        10          20        30        40        50        60   
UCAAAAUGUACAAUUAAU--|       UUAAC     U   U          CACAUUUAUUA 
                    GAUUUUCA     UCCUU GUG AUCUCCGUUU           U
                    UUAAAAGU     AGGAA CGU UGGAGGCAGG           A
ACUAUUAUAAACAUCAAGCG^       UUAUA     U   U          UCAUAUUUACU 
      120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-184-P28_5p*
mirBase accessionMIMAT0012116
Sequence 
0- CUCCUUUGUGUAUCUCCGUUUC -22
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Mature sequence

Sme-Mir-184-P28_3p
mirBase accessionMIMAT0004000
Sequence 
46- GACGGAGGUUUGCUAAGGAAUA -68
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