Mir-184-P16

MirGeneDB ID

Cte-Mir-184-P16

Family name

MIR-184 (all species)

Seed

GGACGGA

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-184a

Paralogues

Cte-Mir-184-P17

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lhy-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Ofu-Mir-184 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tur-Mir-184 War-Mir-184 Xtr-Mir-184

Node of Origin (locus)

C. teleta

Node of Origin (family)

Nephrozoa

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_291: 120205-120266 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-184-P16)

Mir-184-P16 CAPTEscaffold_291: 120205-120266 [+] Ensembl
Mir-184-P17 CAPTEscaffold_291: 120376-120436 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCGUUCGCUGCAUCACUCGAUCGCACGAUUCCUUACCAUUUCUUUGUCCGGUCCGUGUGAUUAUCAUCACUGGACGGAGAACUGAUAAGGGCCUGUGACGACCACGAGCCUCUGGAAGGAUG

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Structure

        10        20          30        40        50        60
GCGUUCGCUGCAUCACUCGA-   -|   AU      C  U             CCGUGUG 
                     UCG CACG  UCCUUA CA UUCUUUGUCCGGU       A
                     AGC GUGU  GGGAAU GU AAGAGGCAGGUCA       U
GUAGGAAGGUCUCCGAGCACC   A^   CC      A  C             CUACUAU 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ea	Fe	Fe	La	La	Ma	Ma	To

Star sequence

Cte-Mir-184-P16_5p*

mirBase accession

None

Sequence

0- CCUUACCAUUUCUUUGUCCGGU -22

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Mature sequence

Cte-Mir-184-P16_3p

mirBase accession

MIMAT0009530

Sequence

40- UGGACGGAGAACUGAUAAGGGC -62

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