MirGeneDB ID | Rph-Mir-92-o53 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
|
Paralogues |
Rph-Mir-92-o51
Rph-Mir-92-o52
Rph-Mir-92-o54
Rph-Mir-92-o55
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
R. philippinarum
|
Node of Origin (family) |
Bilateria
|
Genome context (Ruditapes_GCA_009026015) |
CM018539.1: 17477279-17477336 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACAAGAAUUAUUUUGAUUGGCUUACAGUGAGGUCUGGCCUUGUGCAUCCUGGUUAAAUUCUGUCCAAUUGCACUUGUCCCGGCCUUACUGUGACCAGUGGAACAGCUUUAGAGGUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AACAAGAAUUAUUUUGA---| C U CCUU UCC UUAAA
UUGG UUACAGUGAGGUC GG GUGCA UGG \
GACC AGUGUCAUUCCGG CC CACGU ACC U
UAUGGAGAUUUCGACAAGGU^ - C UGUU UA- UGUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Rph-Mir-92-o53_5p* |
mirBase accession | None |
Sequence |
0- AGGUCUGGCCUUGUGCAUCCUGG -23
Get sequence
|
Mature sequence |
Rph-Mir-92-o53_3p |
mirBase accession | None |
Sequence |
36- AAUUGCACUUGUCCCGGCCUUA -58
Get sequence
|