MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-92-o55

Family name MIR-92 (all species)
Seed AUUGCAC
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-92-o51  Rph-Mir-92-o52  Rph-Mir-92-o53  Rph-Mir-92-o54 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)
CM018539.1: 17478661-17478716 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUCGUAAUUAAAGAGAAGGUGGAAGUUUAGGUCAUGACUUCUGCAAUCUGUAUAUAUUGUCAAAUUGCACUUGUCCCGGCCUGCAUGACCACAUAACACAACAAAGUGGAAAAU
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Structure
        10        20          30        40        50       
GUUUCGUAAUUAAAGAGAAG--|   AA  U      AU   UUC      C  UAUA 
                      GUGG  GU UAGGUC  GAC   UGCAAU UG    U
                      CACC  UA GUCCGG  CUG   ACGUUA AC    A
UAAAAGGUGAAACAACACAAUA^   AG  C      CC   UUC      A  UGUU 
    110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-92-o55_5p*

mirBase accessionNone
Sequence
0- AGGUCAUGACUUCUGCAAUCUG -22
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Mature sequence

Rph-Mir-92-o55_3p

mirBase accessionNone
Sequence
34- AAUUGCACUUGUCCCGGCCUGC -56
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