| MirGeneDB ID | Rph-Mir-92-o52 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
|---|
| Species |
Japanese carpet shell (Ruditapes philippinarum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Rph-Mir-92-o51
Rph-Mir-92-o53
Rph-Mir-92-o54
Rph-Mir-92-o55
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
R. philippinarum
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Ruditapes_GCA_009026015) |
CM018539.1: 17477113-17477170 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUGAGAGCUAAAUAUAGAUUUGUGUGGGAAGGCCGUGCCUUGUGCAACAUUUGUGUUUCAAAUCAAAUUGCACUUGUCCCGGCCUGCUUAUGCUGUCUGAAGCAACGUUUAAAAGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUGAGAGCUAAAUAUA---| UU A UGCCUU AC UGUU
GAU GUGUGGG AGGCCG GUGCA AUUUG U
CUG CGUAUUC UCCGGC CACGU UAAAC C
GAGAAAAUUUGCAACGAAGU^ U- G CCUGUU -- UAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Rph-Mir-92-o52_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGCCGUGCCUUGUGCAACAUUUG -24
Get sequence
|
|---|
| Mature sequence |
Rph-Mir-92-o52_3p |
| mirBase accession | None |
|---|
| Sequence |
36- AAUUGCACUUGUCCCGGCCUGC -58
Get sequence
|
|---|
