MirGeneDB 3.0

MirGeneDB ID

Sme-Mir-92

Family name

MIR-92 (all species)

Seed

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-92

Paralogues

Orthologues

Aae-Mir-92-P3 Aae-Mir-92-P4 Aca-Mir-92-P1a Aca-Mir-92-P1c Aca-Mir-92-P2a Aca-Mir-92-P2c Aga-Mir-92-P3 Aga-Mir-92-P4 Agr-Mir-92-o109 Agr-Mir-92-o110 Agr-Mir-92-o111 Agr-Mir-92-o112 Agr-Mir-92-o113 Ami-Mir-92-P1a Ami-Mir-92-P1c Ami-Mir-92-P1d Ami-Mir-92-P2a Ami-Mir-92-P2c Asu-Mir-92 Ava-Mir-92-P24 Ava-Mir-92-P25 Bfl-Mir-92-o1 Bfl-Mir-92-o2 Bfl-Mir-92-o3 Bfl-Mir-92-o4 Bfl-Mir-92-o5 Bfl-Mir-92-o6 Bfl-Mir-92-o7 Bfl-Mir-92-o8 Bge-Mir-92-P3 Bge-Mir-92-P4 Bge-Mir-92-P14 Bge-Mir-92-P15 Bla-Mir-92-o1 Bla-Mir-92-o2 Bla-Mir-92-o3 Bla-Mir-92-o4 Bla-Mir-92-o5 Bla-Mir-92-o6 Bla-Mir-92-o7 Bla-Mir-92-o8 Bta-Mir-92-P1a Bta-Mir-92-P1c Bta-Mir-92-P1d Bta-Mir-92-P2a Bta-Mir-92-P2c Bta-Mir-92-P2d Cbr-Mir-92-o67 Cbr-Mir-92-o68 Cel-Mir-92 Cfa-Mir-92-P1a Cfa-Mir-92-P1c Cfa-Mir-92-P1d Cfa-Mir-92-P2a Cfa-Mir-92-P2c Cfa-Mir-92-P2d Cin-Mir-92-o69 Cin-Mir-92-o70 Cin-Mir-92-o71 Cin-Mir-92-o72 Cin-Mir-92-o73 Cin-Mir-92-o74 Cin-Mir-92-o75 Cin-Mir-92-o76 Cin-Mir-92-o77 Cin-Mir-92-o78 Cja-Mir-92-P1a Cja-Mir-92-P1c Cja-Mir-92-P1d Cja-Mir-92-P2a Cja-Mir-92-P2c Cja-Mir-92-P2d Cli-Mir-92-P1a Cli-Mir-92-P1c Cli-Mir-92-P2a Cli-Mir-92-P2c Cmi-Mir-92-P1a Cmi-Mir-92-P1b Cmi-Mir-92-P1c Cmi-Mir-92-P1d Cmi-Mir-92-P2a Cmi-Mir-92-P2b Cmi-Mir-92-P2c Cmi-Mir-92-P2d Cpi-Mir-92-P1a Cpi-Mir-92-P1c Cpi-Mir-92-P1d Cpi-Mir-92-P2a Cpi-Mir-92-P2c Cpo-Mir-92-P1a Cpo-Mir-92-P1c Cpo-Mir-92-P1d Cpo-Mir-92-P2a Cpo-Mir-92-P2c Cpo-Mir-92-P2d Csc-Mir-92-P12 Csc-Mir-92-P13 Cte-Mir-92-o36 Cte-Mir-92-o37 Cte-Mir-92-o38 Cte-Mir-92-o61 Dan-Mir-92-P3 Dan-Mir-92-P4 Dan-Mir-92-P5 Dan-Mir-92-P6 Dan-Mir-92-P7 Dan-Mir-92-P8 Dgr-Mir-92-o139 Dgr-Mir-92-o140 Dlo-Mir-92-P3 Dlo-Mir-92-P4 Dlo-Mir-92-P14 Dma-Mir-92-P3 Dma-Mir-92-P4 Dme-Mir-92-P3 Dme-Mir-92-P4 Dme-Mir-92-P5 Dme-Mir-92-P6 Dme-Mir-92-P7 Dme-Mir-92-P8 Dmo-Mir-92-P3 Dmo-Mir-92-P4 Dmo-Mir-92-P5 Dmo-Mir-92-P6 Dmo-Mir-92-P8 Dno-Mir-92-P1a Dno-Mir-92-P1c Dno-Mir-92-P1d Dno-Mir-92-P2a Dno-Mir-92-P2c Dno-Mir-92-P2d Dpu-Mir-92-P3 Dpu-Mir-92-P4 Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Dre-Mir-92-P1d Dre-Mir-92-P2c Dre-Mir-92-P2d Dsi-Mir-92-P3 Dsi-Mir-92-P4 Dsi-Mir-92-P5 Dsi-Mir-92-P6 Dsi-Mir-92-P7 Dsi-Mir-92-P8 Dya-Mir-92-P3 Dya-Mir-92-P4 Dya-Mir-92-P5 Dya-Mir-92-P6a Dya-Mir-92-P6b Dya-Mir-92-P7 Eba-Mir-92-o118 Eba-Mir-92-o119 Ebu-Mir-92-P1e Ebu-Mir-92-P2e Ebu-Mir-92-P2f Eca-Mir-92-P1a Eca-Mir-92-P1c Eca-Mir-92-P1d Eca-Mir-92-P2a Eca-Mir-92-P2c Eca-Mir-92-P2d Efe-Mir-92-o39 Efe-Mir-92-o40 Egr-Mir-92-o134 Egr-Mir-92-o135 Esc-Mir-92 Ete-Mir-92-P1a Ete-Mir-92-P1c Ete-Mir-92-P1d Ete-Mir-92-P2a Ete-Mir-92-P2c Ete-Mir-92-P2d Gga-Mir-92-P1a Gga-Mir-92-P1c Gga-Mir-92-P2a Gga-Mir-92-P2c Gja-Mir-92-P1a Gja-Mir-92-P1c Gja-Mir-92-P1d Gja-Mir-92-P2a Gja-Mir-92-P2c Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gmo-Mir-92-P2c Gmo-Mir-92-P2d Gpa-Mir-92-o62 Gpa-Mir-92-P3 Gpa-Mir-92-P4 Gsp-Mir-92 Hme-Mir-92-P3 Hme-Mir-92-P4 Hmi-Mir-92 Hru-Mir-92-o92 Hru-Mir-92-o93 Hru-Mir-92-o94 Hru-Mir-92-o95 Hsa-Mir-92-P1a Hsa-Mir-92-P1c Hsa-Mir-92-P1d Hsa-Mir-92-P2a Hsa-Mir-92-P2c Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P1a Laf-Mir-92-P1c Laf-Mir-92-P1d Laf-Mir-92-P2a Laf-Mir-92-P2c Laf-Mir-92-P2d Lan-Mir-92-o79a Lan-Mir-92-o79b Lan-Mir-92-o80a Lan-Mir-92-o80b Lan-Mir-92-o81 Lan-Mir-92-o82 Lan-Mir-92-o83 Lan-Mir-92-o84 Lan-Mir-92-o85 Lch-Mir-92-P1a Lch-Mir-92-P1d Lch-Mir-92-P2c Lch-Mir-92-P2d Lgi-Mir-92-o28 Lgi-Mir-92-o29-v1 Lgi-Mir-92-o29-v2 Lgi-Mir-92-o30 Lgi-Mir-92-o31 Lhy-Mir-92-o103 Lhy-Mir-92-o104 Lhy-Mir-92-o105 Lhy-Mir-92-o106 Lhy-Mir-92-o107 Lhy-Mir-92-o108 Llo-Mir-92-o126 Llo-Mir-92-o127 Llo-Mir-92-o128 Llo-Mir-92-o129 Llo-Mir-92-o130 Llo-Mir-92-o131 Loc-Mir-92-P1a Loc-Mir-92-P1d Loc-Mir-92-P2c Loc-Mir-92-P2d Lpo-Mir-92-P9 Lpo-Mir-92-P10 Lpo-Mir-92-P11 Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mal-Mir-92-P1d Mal-Mir-92-P2d Mdo-Mir-92-P1a Mdo-Mir-92-P1c Mdo-Mir-92-P1d Mdo-Mir-92-P2a Mdo-Mir-92-P2c Mdo-Mir-92-P2d Mgi-Mir-92-o32 Mgi-Mir-92-o33 Mgi-Mir-92-o34 Mgi-Mir-92-o35 Mml-Mir-92-P1a Mml-Mir-92-P1c Mml-Mir-92-P1d Mml-Mir-92-P2a Mml-Mir-92-P2c Mml-Mir-92-P2d Mmr-Mir-92-P1a Mmr-Mir-92-P1c Mmr-Mir-92-P1d Mmr-Mir-92-P2a Mmr-Mir-92-P2c Mmr-Mir-92-P2d Mmu-Mir-92-P1a Mmu-Mir-92-P1c Mmu-Mir-92-P1d Mmu-Mir-92-P2a Mmu-Mir-92-P2c Mmu-Mir-92-P2d Mom-Mir-92-o114 Mom-Mir-92-o115 Mom-Mir-92-o116 Mom-Mir-92-o117 Mun-Mir-92-P1a Mun-Mir-92-P1c Mun-Mir-92-P1d Mun-Mir-92-P2a Mun-Mir-92-P2c Neu-Mir-92-P1c Neu-Mir-92-P2a Neu-Mir-92-P2c Npo-Mir-92-o48 Npo-Mir-92-o49 Npo-Mir-92-o50 Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Oan-Mir-92-P1c Oan-Mir-92-P1d Oan-Mir-92-P2a Oan-Mir-92-P2c Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P1a Ocu-Mir-92-P1c Ocu-Mir-92-P1d Ocu-Mir-92-P2a Ocu-Mir-92-P2c Ocu-Mir-92-P2d Ofu-Mir-92-o141 Ofu-Mir-92-o142 Ofu-Mir-92-o143 Ofu-Mir-92-o144 Ofu-Mir-92-o145 Ofu-Mir-92-o146 Ofu-Mir-92-o147 Ofu-Mir-92-o148 Ofu-Mir-92-o149 Pab-Mir-92-P1a Pab-Mir-92-P1c Pab-Mir-92-P1d Pab-Mir-92-P2a Pab-Mir-92-P2c Pab-Mir-92-P2d Pau-Mir-92-o120 Pau-Mir-92-o121 Pau-Mir-92-o122 Pau-Mir-92-o123 Pau-Mir-92-o124 Pau-Mir-92-o125 Pbv-Mir-92-P1a Pbv-Mir-92-P1c Pbv-Mir-92-P1d Pbv-Mir-92-P2c Pca-Mir-92-o96 Pca-Mir-92-o97 Pcr-Mir-92-o150 Pcr-Mir-92-o151 Pdu-Mir-92-o136 Pdu-Mir-92-o137 Pdu-Mir-92-o138 Pfl-Mir-92-o41 Pfl-Mir-92-o42 Pfl-Mir-92-o43 Pfl-Mir-92-o44 Pfl-Mir-92-o45 Pma-Mir-92-P1g Pma-Mir-92-P1h Pma-Mir-92-P1o1 Pma-Mir-92-P2g Pmi-Mir-92-o21 Pmi-Mir-92-o22 Pmi-Mir-92-o23 Pmi-Mir-92-o24 Pmi-Mir-92-o25 Pmi-Mir-92-o26 Pmi-Mir-92-o27 Pve-Mir-92-o98 Pve-Mir-92-o99 Pve-Mir-92-o100 Pve-Mir-92-o101 Pve-Mir-92-o102 Rno-Mir-92-P1a Rno-Mir-92-P1c Rno-Mir-92-P1d Rno-Mir-92-P2a Rno-Mir-92-P2c Rno-Mir-92-P2d Rph-Mir-92-o51 Rph-Mir-92-o52 Rph-Mir-92-o53 Rph-Mir-92-o54 Rph-Mir-92-o55 Sha-Mir-92-P1a Sha-Mir-92-P1c Sha-Mir-92-P1d Sha-Mir-92-P2a Sha-Mir-92-P2c Sha-Mir-92-P2d Sko-Mir-92-o9 Sko-Mir-92-o10 Sko-Mir-92-o11 Sko-Mir-92-o12 Sma-Mir-92-o132 Sma-Mir-92-o133 Snu-Mir-92-o36 Snu-Mir-92-o37 Snu-Mir-92-o38 Snu-Mir-92-o39 Snu-Mir-92-o40 Spt-Mir-92-P1a Spt-Mir-92-P1c Spt-Mir-92-P1d Spt-Mir-92-P2a Spt-Mir-92-P2c Spu-Mir-92-o13 Spu-Mir-92-o14 Spu-Mir-92-o15 Spu-Mir-92-o16 Spu-Mir-92-o17 Spu-Mir-92-o18 Spu-Mir-92-o19 Spu-Mir-92-o20 Sro-Mir-92-P16 Sro-Mir-92-P17 Sro-Mir-92-P18 Sro-Mir-92-P19 Sro-Mir-92-P20 Sto-Mir-92-P1a Sto-Mir-92-P1b Sto-Mir-92-P1c Sto-Mir-92-P1d Sto-Mir-92-P2a Sto-Mir-92-P2b Sto-Mir-92-P2c Tca-Mir-92-P3 Tca-Mir-92-P4 Tca-Mir-92-P14 Tgu-Mir-92-P1a Tgu-Mir-92-P1c Tgu-Mir-92-P1d Tgu-Mir-92-P2a Tgu-Mir-92-P2c Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Tni-Mir-92-P2d Tur-Mir-92-P21 Tur-Mir-92-P22 Tur-Mir-92-P23 Xbo-Mir-92-o86 Xbo-Mir-92-o87 Xbo-Mir-92-o88 Xbo-Mir-92-o89 Xbo-Mir-92-o90 Xbo-Mir-92-o91 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xla-Mir-92-P2a Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P1a Xtr-Mir-92-P1c Xtr-Mir-92-P1d Xtr-Mir-92-P2a Xtr-Mir-92-P2c Xtr-Mir-92-P2d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000068_dd_Smes_g4_68: 526535-526597 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCAGAGAAGACCUUCAAAAAUUGCUAAAUGGUAAAUAUCUAGUGCAAGUCUACAGGUGAAUUUCUUUUUAGAUUGCACUAGUUAAUUAUCAUCAUACAAUUUUUAACCAACAGCCAUUAUGC

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Structure

        10          20        30        40        50        60 
UUCAGAGAAGACCUUCA--|      CUAA       A  U         G   ACAGGUGA 
                   AAAAUUG    AUGGUAA UA CUAGUGCAA UCU        A
                   UUUUAAC    UACUAUU AU GAUCACGUU AGA        U
CGUAUUACCGACAACCAAU^      AUAC       A  U         -   UUUUUCUU 
 120       110       100        90        80         70

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Ag	Ag	Di	Gf	Ne	Ph	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Wh	Wh	Wh

Star sequence

Sme-Mir-92_5p*

mirBase accession

Sequence

0- GGUAAAUAUCUAGUGCAAGUCU -22

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Mature sequence

Sme-Mir-92_3p

mirBase accession

Sequence

41- GAUUGCACUAGUUAAUUAUCAU -63

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