Mir-92-P1c

MirGeneDB ID

Xtr-Mir-92-P1c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-92a-2

Paralogues

Xtr-Mir-92-P1a Xtr-Mir-92-P1d Xtr-Mir-92-P2a Xtr-Mir-92-P2c Xtr-Mir-92-P2d

Orthologues

Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cfa-Mir-92-P1c Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Eca-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gga-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1c Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mml-Mir-92-P1c Mmr-Mir-92-P1c Mmu-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Spt-Mir-92-P1c Sto-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr8: 47197697-47197755 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1c)

Mir-92-P2c chr8: 47197567-47197631 [-] UCSC Ensembl
Mir-92-P1c chr8: 47197697-47197755 [-] UCSC Ensembl
Mir-19-P2c chr8: 47197828-47197884 [-] UCSC Ensembl
Mir-17-P4c chr8: 47197940-47198000 [-] UCSC Ensembl
Mir-17-P2c chr8: 47198097-47198161 [-] UCSC Ensembl
Mir-17-P1c chr8: 47198222-47198278 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCUUCAGGUAUCCAAACUAGCUCCUCUGUGGGUGGGGAUUUGUUGCACUACUGUAUGUAUGAAAAGUAUUGCACUUGUCCCGGCCUGUGGGUGAAAGAUGGACUUUCUGCUUUGAGCU

Get precursor sequence

Structure

        10        20          30        40        50         
GUCUUCAGGUAUCCAAACUAGC--| C    UG   G     UU  U   C    GUAUG 
                        UC UCUG  GGU GGGAU  GU GCA UACU     U
                        AG GGGU  CCG CCCUG  CA CGU AUGA     A
UCGAGUUUCGUCUUUCAGGUAGAA^ U    GU   G     UU  -   U    AAAGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-92-P1c_5p*

mirBase accession

None

Sequence

0- GGGUGGGGAUUUGUUGCACUACU -23

Get sequence

Mature sequence

Xtr-Mir-92-P1c_3p

mirBase accession

MIMAT0003580

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

Get sequence

Proposed targets

TargetScanVert: xtr-miR-92a