MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-92a-2
Paralogues Xtr-Mir-92-P1a  Xtr-Mir-92-P1d  Xtr-Mir-92-P2a  Xtr-Mir-92-P2c  Xtr-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr8: 47197697-47197755 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)
Mir-92-P2c chr8: 47197567-47197631 [-] UCSC Ensembl
Mir-92-P1c chr8: 47197697-47197755 [-] UCSC Ensembl
Mir-19-P2c chr8: 47197828-47197884 [-] UCSC Ensembl
Mir-17-P4c chr8: 47197940-47198000 [-] UCSC Ensembl
Mir-17-P2c chr8: 47198097-47198161 [-] UCSC Ensembl
Mir-17-P1c chr8: 47198222-47198278 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCUUCAGGUAUCCAAACUAGCUCCUCUGUGGGUGGGGAUUUGUUGCACUACUGUAUGUAUGAAAAGUAUUGCACUUGUCCCGGCCUGUGGGUGAAAGAUGGACUUUCUGCUUUGAGCU
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Structure
        10        20          30        40        50         
GUCUUCAGGUAUCCAAACUAGC--| C    UG   G     UU  U   C    GUAUG 
                        UC UCUG  GGU GGGAU  GU GCA UACU     U
                        AG GGGU  CCG CCCUG  CA CGU AUGA     A
UCGAGUUUCGUCUUUCAGGUAGAA^ U    GU   G     UU  -   U    AAAGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-92-P1c_5p*

mirBase accessionNone
Sequence
0- GGGUGGGGAUUUGUUGCACUACU -23
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Mature sequence

Xtr-Mir-92-P1c_3p

mirBase accessionMIMAT0003580
Sequence
37- UAUUGCACUUGUCCCGGCCUGU -59
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Proposed targets TargetScanVert: xtr-miR-92a