Mir-92-P1c

MirGeneDB ID

Mmu-Mir-92-P1c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-92a-2

Paralogues

Mmu-Mir-92-P1a Mmu-Mir-92-P1d Mmu-Mir-92-P2a Mmu-Mir-92-P2c Mmu-Mir-92-P2d

Orthologues

Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cfa-Mir-92-P1c Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Eca-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gga-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1c Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mml-Mir-92-P1c Mmr-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Spt-Mir-92-P1c Sto-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xtr-Mir-92-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chrX: 52741853-52741913 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1c)

Mir-92-P2c chrX: 52741697-52741761 [-] UCSC Ensembl
Mir-92-P1c chrX: 52741853-52741913 [-] UCSC Ensembl
Mir-19-P2c chrX: 52741991-52742056 [-] UCSC Ensembl
Mir-17-P4c chrX: 52742121-52742181 [-] UCSC Ensembl
Mir-17-P2c chrX: 52742341-52742403 [-] UCSC Ensembl
Mir-17-P1c chrX: 52742505-52742563 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUCUUCAGCAUCCAUGCCCAUUCAUCCACAGGUGGGGAUUGGUGGCAUUACUUGUGUUAGAUAUAAAGUAUUGCACUUGUCCCGGCCUGAGGAAGAAAGAGGGUUUUUAAUCGUCUUUUA

Get precursor sequence

Structure

        10         20         30        40        50        60
CAUCUUCAGCAUCCAUG-  CA-|  A   A     G     U    G  U    UGUGUU 
                  CC   UUC UCC CAGGU GGGAU GGUG CA UACU      A
                  GG   AAG AGG GUCCG CCCUG UCAC GU AUGA      G
AUUUUCUGCUAAUUUUUG  AGA^  A   A     G     U    -  U    AAUAUA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-92-P1c_5p*

mirBase accession

MIMAT0004635

Sequence

0- AGGUGGGGAUUGGUGGCAUUACU -23

Get sequence

Proposed targets

microrna.org: MIMAT0004635
TargetScanVert: mmu-miR-92a-2-5p
miRDB: MIMAT0004635

Mature sequence

Mmu-Mir-92-P1c_3p

mirBase accession

MIMAT0000539

Sequence

39- UAUUGCACUUGUCCCGGCCUGA -61

Get sequence

Proposed targets

microrna.org: MIMAT0000539
TargetScanVert: mmu-miR-92a-3p
miRDB: MIMAT0000539