MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-92-P1a  Gja-Mir-92-P1d  Gja-Mir-92-P2a  Gja-Mir-92-P2c 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cja-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Eca-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1c  Isc-Mir-92  Laf-Mir-92-P1c  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmr-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Neu-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pab-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015169856.1: 119224-119288 [-]
Precursor
(pre-Mir +30nt flank)
CCGAAGACAACUUGAAACUGACUUCUCCCUGGGUUGGGAUUUGUUGCAUUACUUGUAGGUUCACUGUGAAGAGUAUUGCACUUGUCCCGGCCUGUGGAGGAGGAGAAGGCUUUUCUUCAGGAGUG
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Structure
        10           20        30        40        50        60  
CCGAAGACAACUUGAAA---| GA       C           UU  U   U    UGUAGGUU 
                    CU  CUUCUCC UGGGUUGGGAU  GU GCA UACU        C
                    GA  GAGGAGG GUCCGGCCCUG  CA CGU AUGA        A
GUGAGGACUUCUUUUCGGAA^ G-       U           UU  -   U    GAAGUGUC 
   120       110        100        90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +2 on the 5p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Gja-Mir-92-P1c_5p*
mirBase accessionNone
Sequence 
0- GGGUUGGGAUUUGUUGCAUUACU -23
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Mature sequence

Gja-Mir-92-P1c_3p
mirBase accessionNone
Sequence 
43- UAUUGCACUUGUCCCGGCCUGU -65
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