MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-92a-2
Paralogues Mdo-Mir-92-P1a  Mdo-Mir-92-P1d  Mdo-Mir-92-P2a  Mdo-Mir-92-P2c  Mdo-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cja-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Eca-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1c  Isc-Mir-92  Laf-Mir-92-P1c  Mml-Mir-92-P1c  Mmr-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Neu-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pab-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(monDom5_add)		 X: 35202231-35202295 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)		 Mir-92-P2c X: 35202093-35202159 [-] UCSC Ensembl
Mir-92-P1c X: 35202231-35202295 [-] UCSC Ensembl
Mir-19-P2c X: 35202389-35202447 [-] UCSC Ensembl
Mir-17-P4c X: 35202543-35202603 [-] UCSC Ensembl
Mir-17-P2c X: 35202855-35202919 [-] UCSC Ensembl
Mir-17-P1c X: 35203052-35203108 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGAAGAUUGUCUUUGGCUGAUUUCUCUGCGGGUGGGGAUUUGUUGCAUUACUUGAUCAUGUGACUAUAAGAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAAGAGGACUUUUCAUCUGUUCCU
Get precursor sequence
Structure
        10           20        30        40        50        60  
UCGAAGAUUGUCUUUGG---| GA      UG     G     UU  U   U    UGAUCAUG 
                    CU  UUUCUC  CGGGU GGGAU  GU GCA UACU        U
                    GA  AAGGAG  GUCCG CCCUG  CA CGU AUGA        G
UCCUUGUCUACUUUUCAGGA^ A-      GU     G     UU  -   U    GAAUAUCA 
   120       110        100        90        80         70
Deep sequencing
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CommentThere are Drosha cuts +2 and +3 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Ce He Ki Te
Star sequence

Mdo-Mir-92-P1c_5p* (predicted)
mirBase accessionMIMAT0031050
Sequence 
0- GGGUGGGGAUUUGUUGCAUUACU -23
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Proposed targets TargetScanVert: mdo-miR-92a-2-5p
Mature sequence

Mdo-Mir-92-P1c_3p
mirBase accessionMIMAT0004171
Sequence 
43- UAUUGCACUUGUCCCGGCCUGU -65
Get sequence
Proposed targets TargetScanVert: mdo-miR-92a-3p