MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-92a-2
Paralogues Cpi-Mir-92-P1a  Cpi-Mir-92-P1d  Cpi-Mir-92-P2a  Cpi-Mir-92-P2c 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584720: 2634933-2634994 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)
Mir-17-P1c JH584720: 2634299-2634357 [+] UCSC Ensembl
Mir-17-P2c JH584720: 2634454-2634518 [+] UCSC Ensembl
Mir-17-P4c JH584720: 2634668-2634729 [+] UCSC Ensembl
Mir-19-P2c JH584720: 2634792-2634851 [+] UCSC Ensembl
Mir-92-P1c JH584720: 2634933-2634994 [+] UCSC Ensembl
Mir-92-P2c JH584720: 2635069-2635133 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGAAGAAGGCUUUUGCACUGGUUUCUCCAUGGGUGGGGAUUUGUUGCAUUACUUGUAGCUAUGUGUAGAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAGGAGGACUUGUCGCCAAUUCUG
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Structure
        10           20        30        40        50        60 
CGAAGAAGGCUUUUGCA---| GG             G     UU  U   U    UGUAGCU 
                    CU  UUUCUCCAUGGGU GGGAU  GU GCA UACU       \
                    GG  AAGGAGGUGUCCG CCCUG  CA CGU AUGA       A
GUCUUAACCGCUGUUCAGGA^ A-             G     UU  -   U    GAUGUGU 
120       110       100         90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +2 as a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-92-P1c_5p*

mirBase accessionMIMAT0037700
Sequence
0- GGGUGGGGAUUUGUUGCAUUACU -23
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Mature sequence

Cpi-Mir-92-P1c_3p

mirBase accessionMIMAT0037699
Sequence
40- UAUUGCACUUGUCCCGGCCUGU -62
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