Mir-92-P1c

MirGeneDB ID

Eca-Mir-92-P1c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-92a-2

Paralogues

Eca-Mir-92-P1a Eca-Mir-92-P1d Eca-Mir-92-P2a Eca-Mir-92-P2c Eca-Mir-92-P2d

Orthologues

Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cfa-Mir-92-P1c Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gga-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1c Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mml-Mir-92-P1c Mmr-Mir-92-P1c Mmu-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Spt-Mir-92-P1c Sto-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xtr-Mir-92-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 110758530-110758590 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1c)

Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAUCUCCGCCACGCAUACCCAUUCAUCCGUGGGUGGGGAUUUGUUGCAUUACUUGUGUUAUAUAUAAAGUAUUGCACUUGUCCCGGCCUGUGGAAGAAAGGAGGAUUUUAUCGUCUUUUUA

Get precursor sequence

Structure

        10          20        30        40        50        60
UAUCUCCGCCACGCAUAC--| A   A    UG   G     UU  U   U    UGUGUU 
                    CC UUC UCCG  GGU GGGAU  GU GCA UACU      A
                    GG AAG AGGU  CCG CCCUG  CA CGU AUGA      U
AUUUUUCUGCUAUUUUAGGA^ A   A    GU   G     UU  -   U    AAUAUA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-92-P1c_5p*

mirBase accession

None

Sequence

0- GGGUGGGGAUUUGUUGCAUUACU -23

Get sequence

Mature sequence

Eca-Mir-92-P1c_3p

mirBase accession

MIMAT0013089

Sequence

39- UAUUGCACUUGUCCCGGCCUGU -61

Get sequence