Mir-17-P4c

MirGeneDB ID

Eca-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-20b

Paralogues

Eca-Mir-17-P1a Eca-Mir-17-P1c Eca-Mir-17-P1d Eca-Mir-17-P2a Eca-Mir-17-P2c Eca-Mir-17-P4a Eca-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 110758796-110758856 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCAAGGAUAAGAUCGGGUCCUGGCAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUUACUCUACUGUAGUGUGGGCACUUCCAGUACUCUUGGAUAACGAAUCUCCUAUUGAUGC

Get precursor sequence

Structure

        10           20        30         40        50          
ACCAAGGAUAAGAUCGG---|   U  C     CA-           G     G   UUUUGG 
                    GUCC GG AGUAC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUGU AUGUC AUC      C
CGUAGUUAUCCUCUAAGCAA^   U  -     ACC           G     -   UCAUUA 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-17-P4c_5p

mirBase accession

MIMAT0013202

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Star sequence

Eca-Mir-17-P4c_3p* (predicted)

mirBase accession

None

Sequence

38- ACUGUAGUGUGGGCACUUCCAGU -61

Get sequence