Mir-17-P4c

MirGeneDB ID

Eca-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-20b

Paralogues

Eca-Mir-17-P1a Eca-Mir-17-P1c Eca-Mir-17-P1d Eca-Mir-17-P2a Eca-Mir-17-P2c Eca-Mir-17-P4a Eca-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 110758796-110758856 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCAAGGAUAAGAUCGGGUCCUGGCAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUUACUCUACUGUAGUGUGGGCACUUCCAGUACUCUUGGAUAACGAAUCUCCUAUUGAUGC

Get precursor sequence

Structure

        10           20        30         40        50          
ACCAAGGAUAAGAUCGG---|   U  C     CA-           G     G   UUUUGG 
                    GUCC GG AGUAC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUGU AUGUC AUC      C
CGUAGUUAUCCUCUAAGCAA^   U  -     ACC           G     -   UCAUUA 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-17-P4c_5p

mirBase accession

MIMAT0013202

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Star sequence

Eca-Mir-17-P4c_3p* (predicted)

mirBase accession

None

Sequence

38- ACUGUAGUGUGGGCACUUCCAGU -61

Get sequence