Mir-17-P4c

MirGeneDB ID

Cfa-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-20b

Paralogues

Cfa-Mir-17-P1a Cfa-Mir-17-P1c Cfa-Mir-17-P1d Cfa-Mir-17-P2a Cfa-Mir-17-P2c Cfa-Mir-17-P4a Cfa-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chrX: 104896094-104896154 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c chrX: 104895658-104895722 [-] UCSC Ensembl
Mir-92-P1c chrX: 104895826-104895886 [-] UCSC Ensembl
Mir-19-P2c chrX: 104895961-104896026 [-] UCSC Ensembl
Mir-17-P4c chrX: 104896094-104896154 [-] UCSC Ensembl
Mir-17-P2c chrX: 104896344-104896408 [-] UCSC Ensembl
Mir-17-P1c chrX: 104896517-104896575 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACGGAAGAGAAGAUGGGGUCUGAGGGGUACCAAAGUGCUCACAGUGCAGGUAGUCUGGGCUUUUCUCUACUGUAGUGUGGGCACUUCCGGUAACCCUCGGACAGCGAGUCUUAGCACGCCG

Get precursor sequence

Structure

        10          20        30         40        50          
ACGGAAGAGAAGAUGGG--         G    A-|          G     G   UCUGGG 
                   GUCUGAGGG UACC  AAGUGCUCACA UGCAG UAG      \
                   CAGGCUCCC AUGG  UUCACGGGUGU AUGUC AUC      C
GCCGCACGAUUCUGAGCGA         A    CC^          G     -   UCUUUU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-17-P4c_5p

mirBase accession

MIMAT0009830

Sequence

0- CAAAGUGCUCACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-20b
miRDB: MIMAT0009830

Star sequence

Cfa-Mir-17-P4c_3p*

mirBase accession

None

Sequence

38- ACUGUAGUGUGGGCACUUCCGGU -61

Get sequence