Mir-17-P4c

MirGeneDB ID

Mml-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-20b

Paralogues

Mml-Mir-17-P1a Mml-Mir-17-P1c Mml-Mir-17-P1d Mml-Mir-17-P2a Mml-Mir-17-P2c Mml-Mir-17-P4a Mml-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 130425501-130425561 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c CM014356.1: 130425071-130425135 [-] UCSC Ensembl
Mir-92-P1c CM014356.1: 130425233-130425293 [-] UCSC Ensembl
Mir-19-P2c CM014356.1: 130425372-130425437 [-] UCSC Ensembl
Mir-17-P4c CM014356.1: 130425501-130425561 [-] UCSC Ensembl
Mir-17-P2c CM014356.1: 130425731-130425795 [-] UCSC Ensembl
Mir-17-P1c CM014356.1: 130425897-130425955 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAGAGGAUAAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUGACUCUACUGUAGUGUGGGCACUUCCAGUACUCUUGGAUAACAAAUCUCUUGUUGAUGG

Get precursor sequence

Structure

        10           20        30         40        50          
ACAGAGGAUAAGAUUGG---|   U  U     CA-           G     G   UUUUGG 
                    GUCC AG AGUAC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUGU AUGUC AUC      C
GGUAGUUGUUCUCUAAACAA^   U  -     ACC           G     -   UCAGUA 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-17-P4c_5p

mirBase accession

MIMAT0006164

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-20b-5p

Star sequence

Mml-Mir-17-P4c_3p*

mirBase accession

MIMAT0026799

Sequence

38- ACUGUAGUGUGGGCACUUCCAGU -61

Get sequence

Proposed targets

TargetScanVert: mml-miR-20b-3p